myRT

myRT report for GCA_001450625.1_WH-SGI-V-07185

Download annotations/find similar RTs

Seq: LLMP01000044.1 Pseudomonas aeruginosa strain WH-SGI-V-07185 WH-SGI-V-07185_contig29, whole genome shotgun sequence (92518 bp)
Overview 1 RT 1: 34142-42327 bp 2 RT 2: 58592-68573 bp Neighborhood of RT #1 [34142, 42335] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [58592, 68593] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH int Feature: gene Location: 34142-35158 bp Feature: domain Description: COG3178 Location: 34145-35144 bp Feature: domain Description: COG31 78 Location: 341 45-351 44 bp Feature: gene Location: 36031-36243 bp Feature: gene Location: 36431-38143 bp Feature: RT Description: RVT_N Location: 36488-36731 bp Feature: RT Description: RVT_N Location: 36488-36731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36776-37412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36776-3741 2 bp Feature: domain Description: YkfC Location: 37622-37772 bp Feature: domain Description: YkfC Location: 37622-37772 bp Feature: domain Description: HNH Note: nucleases Location: 37949-38087 bp Feature: domain Description: HNH Note: nucleases Location: 37949-38087 bp Feature: gene Location: 38276-41062 bp Feature: domain Description: LptD Location: 38471-41048 bp Feature: domain Description: LptD Location: 38471 -41 048 bp Feature: gene Location: 41043-42335 bp Feature: domain Description: PRK10770 Location: 41133-42327 bp Feature: domain Description: PRK1 0770 Location: 41 1 33-42327 bp Feature: gene Location: 58592-60445 bp Feature: domain Description: PRK05658 Location: 58604-60443 bp Feature: domain Description: PRK05658 Location: 58604-60443 bp Feature: gene Location: 60552-64289 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 60660-61317 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 60660-61 31 7 bp Feature: domain Description: PRK09776 Location: 61530-62001 bp Feature: domain Description: PRK09776 Location: 61 530-62001 bp Feature: domain Description: PAS Location: 62049-62583 bp Feature: domain Description: PAS Location: 62049-62583 bp Feature: domain Description: PRK10060 Location: 62592-64239 bp Feature: domain Description: PRK1 0060 Location: 62592-64239 bp Feature: gene Location: 65370-67055 bp Feature: RT Description: RVT_N Location: 65427-65667 bp Feature: RT Description: RVT_N Location: 65427-65667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65715-66351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6571 5-66351 bp Feature: domain Description: GIIM Note: maturase Location: 66405-66636 bp Feature: domain Description: GIIM Note: maturase Location: 66405-66636 bp Feature: domain Description: HNH Note: nucleases Location: 66888-67026 bp Feature: domain Description: HNH Note: nucleases Location: 66888-67026 bp Feature: gene Location: 67321-67548 bp Feature: gene Location: 67550-68593 bp Feature: domain Description: int Location: 67556-68573 bp Feature: domain Description: int Location: 67556-68573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), int (PHA02601)

Seq: LLMP01000078.1 Pseudomonas aeruginosa strain WH-SGI-V-07185 WH-SGI-V-07185_contig6, whole genome shotgun sequence (307354 bp)
Overview 1 RT 1: 278986-282535 bp Neighborhood of RT #1 [278986, 282535] RVT-DGRs Avd_like Feature: gene Location: 278986-279270 bp Feature: gene Location: 279856-280104 bp Feature: gene Location: 280101-281171 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 280257-280944 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 802 57-2 80944 bp Feature: gene Location: 281494-281856 bp Feature: domain Description: Avd_like Location: 281521-281833 bp Feature: domain Description: Avd_like Location: 2 8152 1-2 81833 bp Feature: gene Location: 281871-282535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: LLMP01000068.1 Pseudomonas aeruginosa strain WH-SGI-V-07185 WH-SGI-V-07185_contig50, whole genome shotgun sequence (26301 bp)
Overview 1 RT 1: 1265-4266 bp Neighborhood of RT #1 [1265, 4280] RVT-Retrons VapI Feature: gene Location: 1265-1534 bp Feature: gene Location: 1590-1928 bp Feature: gene Location: 1933-3003 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2068-2635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2068-263 5 bp Feature: gene Location: 3079-3297 bp Feature: gene Location: 3975-4280 bp Feature: domain Description: VapI Location: 3987-4266 bp Feature: domain Description: VapI Location: 3 987-4266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, VapI (COG3093)

Seq: LLMP01000067.1 Pseudomonas aeruginosa strain WH-SGI-V-07185 WH-SGI-V-07185_contig5, whole genome shotgun sequence (345567 bp)
Overview 1 RT 1: 339798-345567 bp Neighborhood of RT #1 [339798, 345567] CHD CHD RVT-GII GIIM Feature: gene Location: 339798-341342 bp Feature: domain Description: CHD Location: 340014-340428 bp Feature: domain Description: CHD Location: 34 0014 -34 04 28 bp Feature: domain Description: CHD Location: 340656-341145 bp Feature: domain Description: CHD Location: 34 0656-34 114 5 bp Feature: gene Location: 342861-343187 bp Feature: gene Location: 343337-344605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343550-344207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 3550-34 4 207 bp Feature: domain Description: GIIM Note: maturase Location: 344285-344507 bp Feature: domain Description: GIIM Note: maturase Location: 34 4 285-34 4 507 bp Feature: gene Location: 345125-345567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLMP01000087.1 Pseudomonas aeruginosa strain WH-SGI-V-07185 WH-SGI-V-07185_contig68, whole genome shotgun sequence (3515 bp)
Overview 1 RT 1: 1-2564 bp Neighborhood of RT #1 [1, 2895] KOG0387 SF2_C_SNF RVT_N RVT-GII GIIM Feature: gene Location: 1-1200 bp Feature: domain Description: KOG0387 Location: 25-151 bp Feature: domain Description: KOG0387 Location: 25 -15 1 bp Feature: domain Description: SF2_C_SNF Location: 703-1081 bp Feature: domain Description: SF2_C_SNF Location: 703-1081 bp Feature: gene Location: 1283-2895 bp Feature: RT Description: RVT_N Location: 1340-1577 bp Feature: RT Description: RVT_N Location: 1340-15 77 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1628-2279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1628-2279 bp Feature: domain Description: GIIM Note: maturase Location: 2333-2564 bp Feature: domain Description: GIIM Note: maturase Location: 2333-25 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)