myRT

myRT report for GCA_001450665.1_WH-SGI-V-07224

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Seq: LLMV01000078.1 Pseudomonas aeruginosa strain WH-SGI-V-07224 WH-SGI-V-07224_contig8, whole genome shotgun sequence (259028 bp)
Overview 1 RT 1: 1745-5931 bp Neighborhood of RT #1 [1745, 5969] DUF772 RVT-GII GIIM IS5 Creatinase_N Creatinase Feature: gene Location: 1745-2257 bp Feature: domain Description: DUF772 Location: 1895-2090 bp Feature: domain Description: DUF772 Location: 1 895-2090 bp Feature: gene Location: 2293-2388 bp Feature: gene Location: 2777-4045 bp Ori: KSE90509.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2990-3647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2990-3647 bp Feature: domain Description: GIIM Note: maturase Location: 3725-3947 bp Feature: domain Description: GIIM Note: maturase Location: 3725-3947 bp Feature: gene Location: 4105-4575 bp Feature: domain Description: IS5 Location: 4111-4546 bp Feature: domain Description: IS5 Location: 41 1 1 -4546 bp Feature: gene Location: 4758-5969 bp Ori: KSE90510.1 Feature: domain Description: Creatinase_N Location: 4839-5232 bp Feature: domain Description: Creatinase_N Location: 4839-5232 bp Feature: domain Description: Creatinase Location: 5253-5931 bp Feature: domain Description: Creatinase Location: 5253-5931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), IS5 (COG3039), Creatinase_N (pfam01321), Creatinase (cd01090)

Seq: LLMV01000022.1 Pseudomonas aeruginosa strain WH-SGI-V-07224 WH-SGI-V-07224_contig29, whole genome shotgun sequence (66732 bp)
Overview 1 RT 1: 62412-66732 bp Neighborhood of RT #1 [62412, 66732] COG4127 AlpA RVT-UG5 nitrilase Feature: gene Location: 62412-63404 bp Ori: KSF01906.1 Feature: domain Description: COG4127 Location: 62418-63393 bp Feature: domain Description: COG412 7 Location: 62 418-63393 bp Feature: gene Location: 63409-63621 bp Ori: OPD82992.1 Feature: domain Description: AlpA Location: 63412-63583 bp Feature: domain Description: AlpA Location: 63412 -63583 bp Feature: gene Location: 63774-66263 bp Ori: KSF01907.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 63780-64215 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 63780-642 15 bp Feature: domain Description: nitrilase Location: 65577-66159 bp Feature: domain Description: nitrilase Location: 65577-66159 bp Feature: gene Location: 66348-66732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424)

Seq: LLMV01000003.1 Pseudomonas aeruginosa strain WH-SGI-V-07224 WH-SGI-V-07224_contig11, whole genome shotgun sequence (233466 bp)
Overview 1 RT 1: 64259-72432 bp 2 RT 2: 88697-98993 bp Neighborhood of RT #1 [64259, 72440] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88697, 99004] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 64259-65275 bp Ori: KSF08095.1 Feature: domain Description: COG3178 Location: 64262-65261 bp Feature: domain Description: COG3 178 Location: 64262-65261 bp Feature: gene Location: 66148-66360 bp Feature: gene Location: 66548-68260 bp Ori: KSF08096.1 Feature: domain Description: RVT_N Location: 66605-66848 bp Feature: domain Description: RVT_N Location: 66605-66848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66893-67529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66893 -67529 bp Feature: domain Description: YkfC Location: 67736-67889 bp Feature: domain Description: YkfC Location: 6773 6-67889 bp Feature: domain Description: HNH Note: nucleases Location: 68066-68204 bp Feature: domain Description: HNH Note: nucleases Location: 68066-68204 bp Feature: gene Location: 68393-71167 bp Ori: KSF08097.1 Feature: domain Description: LptD Location: 68588-71153 bp Feature: domain Description: LptD Location: 68588-71153 bp Feature: gene Location: 71148-72440 bp Ori: KSF08098.1 Feature: domain Description: PRK10770 Location: 71238-72432 bp Feature: domain Description: PRK10770 Location: 7123 8-7243 2 bp Feature: gene Location: 88697-90550 bp Ori: KSF08116.1 Feature: domain Description: PRK05658 Location: 88709-90548 bp Feature: domain Description: PRK05658 Location: 88709-90548 bp Feature: gene Location: 90657-94394 bp Ori: KSF08117.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 90765-91422 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90765-91422 bp Feature: domain Description: PRK09776 Location: 91635-92106 bp Feature: domain Description: PRK09776 Location: 9163 5-92106 bp Feature: domain Description: PAS Location: 92163-92688 bp Feature: domain Description: PAS Location: 92163 -92688 bp Feature: domain Description: PRK10060 Location: 92700-94344 bp Feature: domain Description: PRK10060 Location: 92700-943 44 bp Feature: gene Location: 95475-97160 bp Ori: KSF08118.1 Feature: domain Description: RVT_N Location: 95532-95772 bp Feature: domain Description: RVT_N Location: 9553 2-95772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95820-96456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95820-96456 bp Feature: domain Description: GIIM Note: maturase Location: 96510-96741 bp Feature: domain Description: GIIM Note: maturase Location: 96510-96741 bp Feature: domain Description: HNH Note: nucleases Location: 96993-97131 bp Feature: domain Description: HNH Note: nucleases Location: 96993 -9713 1 bp Feature: gene Location: 97488-97624 bp Feature: gene Location: 97883-99004 bp Ori: KSF08119.1 Feature: domain Description: COG3177 Location: 97901-98993 bp Feature: domain Description: COG3 177 Location: 97901-98993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )