myRT

myRT report for GCA_001450675.1_WH-SGI-V-07227

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Seq: LLMY01000046.1 Pseudomonas aeruginosa strain WH-SGI-V-07227 WH-SGI-V-07227_contig28, whole genome shotgun sequence (88395 bp)
Overview 1 RT 1: 76978-87672 bp Neighborhood of RT #1 [76978, 87672] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH INT_Rci_Hp1_C Feature: gene Location: 76978-78831 bp Feature: domain Description: PRK05658 Location: 76990-78829 bp Feature: domain Description: PRK05658 Location: 76990-78829 bp Feature: gene Location: 78938-82675 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 79046-79703 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 79046-79703 bp Feature: domain Description: PRK09776 Location: 79916-80387 bp Feature: domain Description: PRK09776 Location: 7991 6-80387 bp Feature: domain Description: PAS Location: 80432-80969 bp Feature: domain Description: PAS Location: 80432-80969 bp Feature: domain Description: PRK10060 Location: 80978-82625 bp Feature: domain Description: PRK1 0060 Location: 80978-82625 bp Feature: gene Location: 83756-85441 bp Feature: RT Description: RVT_N Location: 83813-84053 bp Feature: RT Description: RVT_N Location: 8381 3-84053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84101-84737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841 01 -84737 bp Feature: domain Description: GIIM Note: maturase Location: 84791-85022 bp Feature: domain Description: GIIM Note: maturase Location: 84791 -85022 bp Feature: domain Description: HNH Note: nucleases Location: 85274-85412 bp Feature: domain Description: HNH Note: nucleases Location: 85274-8541 2 bp Feature: gene Location: 85743-86837 bp Feature: domain Description: INT_Rci_Hp1_C Location: 86253-86754 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 86253-86754 bp Feature: gene Location: 86914-87672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), INT_Rci_Hp1_C (cd00796)