myRT

myRT report for GCA_001450795.1_WH-SGI-V-07246

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Seq: LLNR01000102.1 Pseudomonas aeruginosa strain WH-SGI-V-07246 WH-SGI-V-07246_contig5, whole genome shotgun sequence (267772 bp)
Overview 1 RT 1: 263627-267689 bp Neighborhood of RT #1 [263627, 267772] COG4127 AlpA RVT-UG5 nitrilase rve_3 Feature: gene Location: 263627-264619 bp Ori: KSG78005.1 Feature: domain Description: COG4127 Location: 263633-264608 bp Feature: domain Description: COG41 27 Location: 263633-264608 bp Feature: gene Location: 264624-264836 bp Ori: OPD85899.1 Feature: domain Description: AlpA Location: 264627-264798 bp Feature: domain Description: AlpA Location: 264627-264798 bp Feature: gene Location: 264989-267478 bp Ori: KSG78006.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 264995-265430 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 264995-265430 bp Feature: domain Description: nitrilase Location: 266792-267374 bp Feature: domain Description: nitrilase Location: 266792-267374 bp Feature: gene Location: 267563-267772 bp Ori: OPD85902.1 Feature: domain Description: rve_3 Location: 267566-267689 bp Feature: domain Description: rve_3 Location: 267566-267689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424), rve_3 (pfam13683)

Seq: LLNR01000099.1 Pseudomonas aeruginosa strain WH-SGI-V-07246 WH-SGI-V-07246_contig47, whole genome shotgun sequence (27583 bp)
Overview 1 RT 1: 7947-13528 bp Neighborhood of RT #1 [7947, 14484] DEXHc_Snf SF2_C_SNF RVT_N RVT-GII GIIM HNH DEXHc_Snf AdoMet_MTases Feature: gene Location: 7947-8403 bp Feature: gene Location: 8498-9742 bp Feature: domain Description: DEXHc_Snf Location: 8519-8672 bp Feature: domain Description: DEXHc_Snf Location: 8519-8672 bp Feature: domain Description: SF2_C_SNF Location: 9200-9578 bp Feature: domain Description: SF2 _C_SNF Location: 92 00-9578 bp Feature: gene Location: 9825-11441 bp Ori: KSG78421.1 Feature: domain Description: RVT_N Location: 9882-10119 bp Feature: domain Description: RVT_N Location: 9882 -10119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10170-10821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10170-1082 1 bp Feature: domain Description: GIIM Note: maturase Location: 10875-11106 bp Feature: domain Description: GIIM Note: maturase Location: 10875-11106 bp Feature: domain Description: HNH Note: nucleases Location: 11295-11394 bp Feature: domain Description: HNH Note: nucleases Location: 112 95-11394 bp Feature: gene Location: 12059-12934 bp Feature: domain Description: DEXHc_Snf Location: 12251-12497 bp Feature: domain Description: DEXHc_Snf Location: 12 2 51-12 497 bp Feature: gene Location: 13039-14484 bp Ori: KSG78422.1 Feature: domain Description: AdoMet_MTases Location: 13162-13528 bp Feature: domain Description: AdoMet_MTases Location: 13162 -1352 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), AdoMet_MTases (cl17173)