myRT

myRT report for GCA_001450825.1_WH-SGI-V-07371

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Seq: LLNV01000105.1 Pseudomonas aeruginosa strain WH-SGI-V-07371 WH-SGI-V-07371_contig8, whole genome shotgun sequence (233476 bp)
Overview 1 RT 1: 134459-144764 bp 2 RT 2: 161023-169190 bp Neighborhood of RT #1 [134459, 144766] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [161023, 169204] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 134459-135580 bp Ori: KSG82753.1 Feature: domain Description: COG3177 Location: 134477-135569 bp Feature: domain Description: COG31 77 Location: 1 34477-1 35569 bp Feature: gene Location: 135839-135975 bp Feature: gene Location: 136303-137988 bp Ori: KSG82754.1 Feature: domain Description: RVT_N Location: 136360-136600 bp Feature: domain Description: RVT_N Location: 1 36360-1 36600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136648-137284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36648-1 37284 bp Feature: domain Description: GIIM Note: maturase Location: 137338-137569 bp Feature: domain Description: GIIM Note: maturase Location: 1 37338-1 37569 bp Feature: domain Description: HNH Note: nucleases Location: 137821-137959 bp Feature: domain Description: HNH Note: nucleases Location: 1 37821 -1 37959 bp Feature: gene Location: 139069-142806 bp Ori: KSG82755.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 139177-139834 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 391 77-1 39834 bp Feature: domain Description: PRK09776 Location: 140047-140518 bp Feature: domain Description: PRK09776 Location: 1 40047-1 4051 8 bp Feature: domain Description: PAS Location: 140575-141100 bp Feature: domain Description: PAS Location: 1 40575-1 41 1 00 bp Feature: domain Description: PRK10060 Location: 141112-142756 bp Feature: domain Description: PRK1 0060 Location: 1 41 1 1 2-1 42756 bp Feature: gene Location: 142913-144766 bp Ori: KSG82756.1 Feature: domain Description: PRK05658 Location: 142925-144764 bp Feature: domain Description: PRK05658 Location: 1 42925-1 44764 bp Feature: gene Location: 161023-162315 bp Ori: KSG82774.1 Feature: domain Description: PRK10770 Location: 161113-162307 bp Feature: domain Description: PRK1 0770 Location: 1 61 1 1 3-1 62307 bp Feature: gene Location: 162296-165070 bp Ori: KSG82775.1 Feature: domain Description: LptD Location: 162491-165056 bp Feature: domain Description: LptD Location: 1 62491 -1 65056 bp Feature: gene Location: 165203-166915 bp Ori: KSG82776.1 Feature: domain Description: RVT_N Location: 165260-165503 bp Feature: domain Description: RVT_N Location: 1 65260-1 65503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165548-166184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65548-1 661 84 bp Feature: domain Description: YkfC Location: 166391-166544 bp Feature: domain Description: YkfC Location: 1 66391 -1 66544 bp Feature: domain Description: HNH Note: nucleases Location: 166721-166859 bp Feature: domain Description: HNH Note: nucleases Location: 1 66721 -1 66859 bp Feature: gene Location: 167103-167315 bp Feature: gene Location: 168188-169204 bp Ori: KSG82777.1 Feature: domain Description: COG3178 Location: 168191-169190 bp Feature: domain Description: COG31 78 Location: 1 681 91 -1 691 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLNV01000102.1 Pseudomonas aeruginosa strain WH-SGI-V-07371 WH-SGI-V-07371_contig77, whole genome shotgun sequence (1969 bp)
Overview 1 RT 1: 83-1754 bp Neighborhood of RT #1 [83, 1801] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1801 bp Ori: KSG83178.1 Feature: domain Description: RVT_N Location: 140-377 bp Feature: domain Description: RVT_N Location: 140-377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 8-1079 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1364 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1364 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LLNV01000066.1 Pseudomonas aeruginosa strain WH-SGI-V-07371 WH-SGI-V-07371_contig44, whole genome shotgun sequence (35491 bp)
Overview 1 RT 1: 1-4135 bp Neighborhood of RT #1 [1, 4146] rve_3 RVT-UG5 nitrilase AlpA COG4127 Feature: gene Location: 1-210 bp Ori: OPD86880.1 Feature: domain Description: rve_3 Location: 4-127 bp Feature: domain Description: rve_3 Location: 4-127 bp Feature: gene Location: 295-2784 bp Ori: KSG87698.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 301-736 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 01-73 6 bp Feature: domain Description: nitrilase Location: 2098-2680 bp Feature: domain Description: nitrilase Location: 2098-2680 bp Feature: gene Location: 2937-3149 bp Ori: OPD86876.1 Feature: domain Description: AlpA Location: 2940-3111 bp Feature: domain Description: AlpA Location: 2940-3 111 bp Feature: gene Location: 3154-4146 bp Ori: KSG87699.1 Feature: domain Description: COG4127 Location: 3160-4135 bp Feature: domain Description: COG4127 Location: 3 160-413 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-UG5, nitrilase (cl11424), AlpA (COG3311), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily )