myRT

myRT report for GCA_001450905.1_WH-SGI-V-07385

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Seq: LLOJ01000125.1 Pseudomonas aeruginosa strain WH-SGI-V-07385 WH-SGI-V-07385_contig6, whole genome shotgun sequence (371139 bp)
Overview 1 RT 1: 290203-299348 bp Neighborhood of RT #1 [290203, 299350] HipA_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 290203-290280 bp Feature: gene Location: 290266-290583 bp Feature: domain Description: HipA_C Location: 290299-290467 bp Feature: domain Description: HipA_C Location: 290299-290467 bp Feature: gene Location: 290887-292572 bp Feature: RT Description: RVT_N Location: 290944-291184 bp Feature: RT Description: RVT_N Location: 290944-291 1 84 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291232-291868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 232-291 868 bp Feature: domain Description: GIIM Note: maturase Location: 291922-292153 bp Feature: domain Description: GIIM Note: maturase Location: 291 922-2921 53 bp Feature: domain Description: HNH Note: nucleases Location: 292405-292543 bp Feature: domain Description: HNH Note: nucleases Location: 292405-292543 bp Feature: gene Location: 293653-297390 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 293761-294418 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 293761 -29441 8 bp Feature: domain Description: PRK09776 Location: 294631-295102 bp Feature: domain Description: PRK09776 Location: 294631 -2951 02 bp Feature: domain Description: PAS Location: 295147-295684 bp Feature: domain Description: PAS Location: 2951 47-295684 bp Feature: domain Description: PRK10060 Location: 295693-297340 bp Feature: domain Description: PRK1 0060 Location: 295693-297340 bp Feature: gene Location: 297497-299350 bp Feature: domain Description: PRK05658 Location: 297509-299348 bp Feature: domain Description: PRK05658 Location: 297509-299348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA_C (pfam07804), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)