myRT

myRT report for GCA_001450925.1_WH-SGI-V-07381

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Seq: LLOF01000078.1 Pseudomonas aeruginosa strain WH-SGI-V-07381 WH-SGI-V-07381_contig4, whole genome shotgun sequence (444479 bp)
Overview 1 RT 1: 104467-112666 bp 2 RT 2: 128931-139173 bp Neighborhood of RT #1 [104467, 112674] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [128931, 139173] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH SmaI Feature: gene Location: 104467-105483 bp Feature: domain Description: COG3178 Location: 104470-105469 bp Feature: domain Description: COG31 78 Location: 1 04470-1 05469 bp Feature: gene Location: 106356-106568 bp Feature: gene Location: 106755-108467 bp Feature: RT Description: RVT_N Location: 106812-107055 bp Feature: RT Description: RVT_N Location: 1 0681 2-1 07055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107100-107733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 071 00-1 07733 bp Feature: domain Description: YkfC Location: 107946-108096 bp Feature: domain Description: YkfC Location: 1 07946-1 08096 bp Feature: domain Description: HNH Note: nucleases Location: 108273-108411 bp Feature: domain Description: HNH Note: nucleases Location: 1 08273-1 0841 1 bp Feature: gene Location: 108600-111401 bp Feature: domain Description: LptD Location: 108795-111387 bp Feature: domain Description: LptD Location: 1 08795-1 1 1 387 bp Feature: gene Location: 111382-112674 bp Feature: domain Description: PRK10770 Location: 111472-112666 bp Feature: domain Description: PRK1 0770 Location: 1 1 1 472-1 1 2666 bp Feature: gene Location: 128931-130784 bp Feature: domain Description: PRK05658 Location: 128943-130782 bp Feature: domain Description: PRK05658 Location: 1 28943-1 30782 bp Feature: gene Location: 130891-134628 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 130999-131656 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 30999-1 31 656 bp Feature: domain Description: PRK09776 Location: 131869-132340 bp Feature: domain Description: PRK09776 Location: 1 31 869-1 32340 bp Feature: domain Description: PAS Location: 132397-132922 bp Feature: domain Description: PAS Location: 1 32397-1 32922 bp Feature: domain Description: PRK10060 Location: 132931-134578 bp Feature: domain Description: PRK1 0060 Location: 1 32931 -1 34578 bp Feature: gene Location: 135709-137394 bp Feature: RT Description: RVT_N Location: 135766-136006 bp Feature: RT Description: RVT_N Location: 1 35766-1 36006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136054-136690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36054-1 36690 bp Feature: domain Description: GIIM Note: maturase Location: 136744-136975 bp Feature: domain Description: GIIM Note: maturase Location: 1 36744-1 36975 bp Feature: domain Description: HNH Note: nucleases Location: 137227-137365 bp Feature: domain Description: HNH Note: nucleases Location: 1 37227-1 37365 bp Feature: gene Location: 137830-138450 bp Feature: domain Description: SmaI Location: 137836-138433 bp Feature: domain Description: SmaI Location: 1 37836-1 38433 bp Feature: gene Location: 138883-139173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), SmaI (pfam17411)