myRT

myRT report for GCA_001450995.1_WH-SGI-V-07387

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Seq: LLOL01000034.1 Pseudomonas aeruginosa strain WH-SGI-V-07387 WH-SGI-V-07387_contig4, whole genome shotgun sequence (412038 bp)
Overview 1 RT 1: 50306-58505 bp 2 RT 2: 74770-85067 bp Neighborhood of RT #1 [50306, 58513] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74770, 85078] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50306-51322 bp Feature: domain Description: COG3178 Location: 50309-51308 bp Feature: domain Description: COG31 78 Location: 50309-51 308 bp Feature: gene Location: 52194-52406 bp Feature: gene Location: 52594-54306 bp Feature: RT Description: RVT_N Location: 52651-52894 bp Feature: RT Description: RVT_N Location: 52651 -52894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52939-53575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52939-53575 bp Feature: domain Description: YkfC Location: 53782-53935 bp Feature: domain Description: YkfC Location: 53782-53935 bp Feature: domain Description: HNH Note: nucleases Location: 54112-54250 bp Feature: domain Description: HNH Note: nucleases Location: 541 1 2-54250 bp Feature: gene Location: 54439-57240 bp Feature: domain Description: LptD Location: 54634-57226 bp Feature: domain Description: LptD Location: 54634-57226 bp Feature: gene Location: 57221-58513 bp Feature: domain Description: PRK10770 Location: 57311-58505 bp Feature: domain Description: PRK1 0770 Location: 5731 1 -58505 bp Feature: gene Location: 74770-76623 bp Feature: domain Description: PRK05658 Location: 74782-76621 bp Feature: domain Description: PRK05658 Location: 74782-76621 bp Feature: gene Location: 76730-80467 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76838-77495 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76838-77495 bp Feature: domain Description: PRK09776 Location: 77708-78179 bp Feature: domain Description: PRK09776 Location: 77708-781 79 bp Feature: domain Description: PAS Location: 78239-78761 bp Feature: domain Description: PAS Location: 78239-78761 bp Feature: domain Description: PRK10060 Location: 78770-80417 bp Feature: domain Description: PRK1 0060 Location: 78770-8041 7 bp Feature: gene Location: 81548-83233 bp Feature: RT Description: RVT_N Location: 81605-81845 bp Feature: RT Description: RVT_N Location: 81 605-81 845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81893-82529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 893-82529 bp Feature: domain Description: GIIM Note: maturase Location: 82583-82814 bp Feature: domain Description: GIIM Note: maturase Location: 82583-8281 4 bp Feature: domain Description: HNH Note: nucleases Location: 83066-83204 bp Feature: domain Description: HNH Note: nucleases Location: 83066-83204 bp Feature: gene Location: 83562-83698 bp Feature: gene Location: 83957-85078 bp Feature: domain Description: COG3177 Location: 83975-85067 bp Feature: domain Description: COG31 77 Location: 83975-85067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )