myRT

myRT report for GCA_001451025.1_WH-SGI-V-07390

Download annotations/find similar RTs

Seq: LLOO01000075.1 Pseudomonas aeruginosa strain WH-SGI-V-07390 WH-SGI-V-07390_contig71, whole genome shotgun sequence (2421 bp)
Overview 1 RT 1: 86-1757 bp Neighborhood of RT #1 [86, 1804] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 86-1804 bp Ori: KSH85799.1 Feature: domain Description: RVT_N Location: 143-380 bp Feature: domain Description: RVT_N Location: 1 43-380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 -1 082 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1367 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 36-1 367 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1757 bp Feature: domain Description: HNHc Note: nucleases Location: 1 601 -1 757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LLOO01000062.1 Pseudomonas aeruginosa strain WH-SGI-V-07390 WH-SGI-V-07390_contig6, whole genome shotgun sequence (233339 bp)
Overview 1 RT 1: 134337-144642 bp 2 RT 2: 160901-169067 bp Neighborhood of RT #1 [134337, 144644] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [160901, 169081] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 134337-135458 bp Ori: KSH87244.1 Feature: domain Description: COG3177 Location: 134355-135447 bp Feature: domain Description: COG3177 Location: 134355-135447 bp Feature: gene Location: 135717-135853 bp Feature: gene Location: 136181-137866 bp Ori: KSH87245.1 Feature: domain Description: RVT_N Location: 136238-136478 bp Feature: domain Description: RVT_N Location: 1362 38-136478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136526-137162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13652 6-137162 bp Feature: domain Description: GIIM Note: maturase Location: 137216-137447 bp Feature: domain Description: GIIM Note: maturase Location: 1372 16-137447 bp Feature: domain Description: HNH Note: nucleases Location: 137699-137837 bp Feature: domain Description: HNH Note: nucleases Location: 137699-137837 bp Feature: gene Location: 138947-142684 bp Ori: KSH87246.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 139055-139712 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 139055-139712 bp Feature: domain Description: PRK09776 Location: 139925-140396 bp Feature: domain Description: PRK09776 Location: 13992 5-140396 bp Feature: domain Description: PAS Location: 140453-140978 bp Feature: domain Description: PAS Location: 140453-140978 bp Feature: domain Description: PRK10060 Location: 140990-142634 bp Feature: domain Description: PRK10060 Location: 140990-142 634 bp Feature: gene Location: 142791-144644 bp Ori: KSH87247.1 Feature: domain Description: PRK05658 Location: 142803-144642 bp Feature: domain Description: PRK05658 Location: 142 803-144642 bp Feature: gene Location: 160901-162193 bp Ori: KSH87265.1 Feature: domain Description: PRK10770 Location: 160991-162185 bp Feature: domain Description: PRK10770 Location: 160991-162 185 bp Feature: gene Location: 162174-164948 bp Ori: KSH87266.1 Feature: domain Description: LptD Location: 162369-164934 bp Feature: domain Description: LptD Location: 162 369-164934 bp Feature: gene Location: 165081-166793 bp Ori: KSH87267.1 Feature: domain Description: RVT_N Location: 165138-165381 bp Feature: domain Description: RVT_N Location: 165138-165381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165426-166059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16542 6-166059 bp Feature: domain Description: YkfC Location: 166272-166422 bp Feature: domain Description: YkfC Location: 1662 72 -16642 2 bp Feature: domain Description: HNH Note: nucleases Location: 166599-166737 bp Feature: domain Description: HNH Note: nucleases Location: 166599-166737 bp Feature: gene Location: 166980-167192 bp Feature: gene Location: 168065-169081 bp Ori: KSH87268.1 Feature: domain Description: COG3178 Location: 168068-169067 bp Feature: domain Description: COG3178 Location: 168068-169067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLOO01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07390 WH-SGI-V-07390_contig1, whole genome shotgun sequence (632076 bp)
Overview 1 RT 1: 1-4135 bp Neighborhood of RT #1 [1, 4146] rve_3 RVT-UG5 nitrilase AlpA COG4127 Feature: gene Location: 1-210 bp Ori: OPD93421.1 Feature: domain Description: rve_3 Location: 4-127 bp Feature: domain Description: rve_3 Location: 4-127 bp Feature: gene Location: 295-2784 bp Ori: KSH99659.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 301-736 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 01-73 6 bp Feature: domain Description: nitrilase Location: 2098-2680 bp Feature: domain Description: nitrilase Location: 2098-2680 bp Feature: gene Location: 2937-3149 bp Ori: OPD93409.1 Feature: domain Description: AlpA Location: 2940-3111 bp Feature: domain Description: AlpA Location: 2940-3 111 bp Feature: gene Location: 3154-4146 bp Ori: KSH99660.1 Feature: domain Description: COG4127 Location: 3160-4135 bp Feature: domain Description: COG4127 Location: 3 160-413 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-UG5, nitrilase (cl11424), AlpA (COG3311), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily )