myRT

myRT report for GCA_001451065.1_WH-SGI-V-07392

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Seq: LLOQ01000102.1 Pseudomonas aeruginosa strain WH-SGI-V-07392 WH-SGI-V-07392_contig43, whole genome shotgun sequence (41969 bp)
Overview 1 RT 1: 7600-14911 bp Neighborhood of RT #1 [7600, 15966] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 7600-8739 bp Ori: KSI47350.1 Feature: domain Description: AAA_21 Location: 7672-7741 bp Feature: domain Description: AAA_21 Location: 7672-7741 bp Feature: domain Description: AAA_21 Location: 8215-8545 bp Feature: domain Description: AAA_21 Location: 821 5-8545 bp Feature: gene Location: 8739-9296 bp Feature: gene Location: 9815-12313 bp Ori: KSI47352.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 9818-10259 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 981 8-1 0259 bp Feature: gene Location: 13351-14091 bp Ori: KSI47365.2 Feature: domain Description: YeeA Location: 13366-13957 bp Feature: domain Description: YeeA Location: 1 3366-1 3957 bp Feature: gene Location: 14095-15966 bp Ori: KSI47353.1 Feature: domain Description: DUF262 Location: 14143-14911 bp Feature: domain Description: DUF262 Location: 1 41 43-1 491 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: LLOQ01000150.1 Pseudomonas aeruginosa strain WH-SGI-V-07392 WH-SGI-V-07392_contig87, whole genome shotgun sequence (1861 bp)
Overview 1 RT 1: 65-1235 bp Neighborhood of RT #1 [65, 1333] RVT-GII GIIM Feature: gene Location: 65-1333 bp Ori: KSI42435.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 78-935 bp Feature: domain Description: GIIM Note: maturase Location: 1013-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1013-12 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LLOQ01000098.1 Pseudomonas aeruginosa strain WH-SGI-V-07392 WH-SGI-V-07392_contig4, whole genome shotgun sequence (315235 bp)
Overview 1 RT 1: 50175-58345 bp 2 RT 2: 74609-84905 bp Neighborhood of RT #1 [50175, 58353] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74609, 84916] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50175-51191 bp Ori: KSI48262.1 Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: domain Description: COG3 178 Location: 50178-51177 bp Feature: gene Location: 52064-52276 bp Feature: gene Location: 52464-54176 bp Ori: KSI48263.1 Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53 445 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: YkfC Location: 53 655-53 805 bp Feature: domain Description: HNH Note: nucleases Location: 53982-54120 bp Feature: domain Description: HNH Note: nucleases Location: 53 982-54120 bp Feature: gene Location: 54309-57080 bp Ori: KSI48264.1 Feature: domain Description: LptD Location: 54504-57066 bp Feature: domain Description: LptD Location: 54504-57066 bp Feature: gene Location: 57061-58353 bp Ori: KSI48265.1 Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: domain Description: PRK10770 Location: 57151-583 45 bp Feature: gene Location: 74609-76462 bp Ori: KSI48283.1 Feature: domain Description: PRK05658 Location: 74621-76460 bp Feature: domain Description: PRK05658 Location: 74621-76460 bp Feature: gene Location: 76569-80306 bp Ori: KSI48284.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-773 3 4 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: gene Location: 81387-83072 bp Ori: KSI48285.1 Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8173 2-823 68 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83 043 bp Feature: gene Location: 83400-83536 bp Feature: gene Location: 83795-84916 bp Ori: KSI48286.1 Feature: domain Description: COG3177 Location: 83813-84905 bp Feature: domain Description: COG3 177 Location: 83 813 -84905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )