myRT

myRT report for GCA_001451125.1_WH-SGI-V-07406

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Seq: LLOT01000056.1 Pseudomonas aeruginosa strain WH-SGI-V-07406 WH-SGI-V-07406_contig6, whole genome shotgun sequence (410691 bp)
Overview 1 RT 1: 219782-223121 bp Neighborhood of RT #1 [219782, 223297] DUF488 DDE_Tnp_1 RVT-GII GIIM DUF772 Feature: gene Location: 219782-220213 bp Feature: domain Description: DUF488 Location: 219821-220175 bp Feature: domain Description: DUF488 Location: 21 9821 -2201 75 bp Feature: gene Location: 220466-220936 bp Feature: domain Description: DDE_Tnp_1 Location: 220472-220886 bp Feature: domain Description: DDE_Tnp_1 Location: 220472-220886 bp Feature: gene Location: 221010-222254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221214-221871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 21 4-221 871 bp Feature: domain Description: GIIM Note: maturase Location: 221949-222171 bp Feature: domain Description: GIIM Note: maturase Location: 221 949-2221 71 bp Feature: gene Location: 222654-222752 bp Feature: gene Location: 222785-223297 bp Feature: domain Description: DUF772 Location: 222935-223121 bp Feature: domain Description: DUF772 Location: 222935-2231 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF488 (pfam04343), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: LLOT01000045.1 Pseudomonas aeruginosa strain WH-SGI-V-07406 WH-SGI-V-07406_contig5, whole genome shotgun sequence (411988 bp)
Overview 1 RT 1: 50306-58505 bp 2 RT 2: 74770-85067 bp Neighborhood of RT #1 [50306, 58513] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74770, 85078] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50306-51322 bp Feature: domain Description: COG3178 Location: 50309-51308 bp Feature: domain Description: COG3178 Location: 50309-51308 bp Feature: gene Location: 52194-52406 bp Feature: gene Location: 52594-54306 bp Feature: RT Description: RVT_N Location: 52651-52894 bp Feature: RT Description: RVT_N Location: 52 651-52 894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52939-53575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 939-53575 bp Feature: domain Description: YkfC Location: 53782-53935 bp Feature: domain Description: YkfC Location: 53782 -53935 bp Feature: domain Description: HNH Note: nucleases Location: 54112-54250 bp Feature: domain Description: HNH Note: nucleases Location: 54112 -542 50 bp Feature: gene Location: 54439-57240 bp Feature: domain Description: LptD Location: 54634-57226 bp Feature: domain Description: LptD Location: 54634-572 2 6 bp Feature: gene Location: 57221-58513 bp Feature: domain Description: PRK10770 Location: 57311-58505 bp Feature: domain Description: PRK10770 Location: 57311-58505 bp Feature: gene Location: 74770-76623 bp Feature: domain Description: PRK05658 Location: 74782-76621 bp Feature: domain Description: PRK05658 Location: 74782 -7662 1 bp Feature: gene Location: 76730-80467 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76838-77495 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76838-77495 bp Feature: domain Description: PRK09776 Location: 77708-78179 bp Feature: domain Description: PRK09776 Location: 77708-78179 bp Feature: domain Description: PAS Location: 78239-78761 bp Feature: domain Description: PAS Location: 782 39-78761 bp Feature: domain Description: PRK10060 Location: 78770-80417 bp Feature: domain Description: PRK10060 Location: 78770-80417 bp Feature: gene Location: 81548-83233 bp Feature: RT Description: RVT_N Location: 81605-81845 bp Feature: RT Description: RVT_N Location: 81605-81845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81893-82529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81893-82 52 9 bp Feature: domain Description: GIIM Note: maturase Location: 82583-82814 bp Feature: domain Description: GIIM Note: maturase Location: 82 583-82 814 bp Feature: domain Description: HNH Note: nucleases Location: 83066-83204 bp Feature: domain Description: HNH Note: nucleases Location: 83066-832 04 bp Feature: gene Location: 83562-83698 bp Feature: gene Location: 83957-85078 bp Feature: domain Description: COG3177 Location: 83975-85067 bp Feature: domain Description: COG3177 Location: 83975-85067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )