myRT

myRT report for GCA_001451255.1_WH-SGI-V-07388

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Seq: LLOM01000104.1 Pseudomonas aeruginosa strain WH-SGI-V-07388 WH-SGI-V-07388_contig6, whole genome shotgun sequence (267772 bp)
Overview 1 RT 1: 263627-267689 bp Neighborhood of RT #1 [263627, 267772] COG4127 AlpA RVT-UG5 nitrilase rve_3 Feature: gene Location: 263627-264619 bp Ori: KSH61981.1 Feature: domain Description: COG4127 Location: 263633-264608 bp Feature: domain Description: COG41 27 Location: 263633-264608 bp Feature: gene Location: 264624-264836 bp Ori: OPD91780.1 Feature: domain Description: AlpA Location: 264627-264798 bp Feature: domain Description: AlpA Location: 264627-264798 bp Feature: gene Location: 264989-267478 bp Ori: KSH61982.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 264995-265430 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 264995-265430 bp Feature: domain Description: nitrilase Location: 266792-267374 bp Feature: domain Description: nitrilase Location: 266792-267374 bp Feature: gene Location: 267563-267772 bp Ori: OPD91782.1 Feature: domain Description: rve_3 Location: 267566-267689 bp Feature: domain Description: rve_3 Location: 267566-267689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424), rve_3 (pfam13683)

Seq: LLOM01000088.1 Pseudomonas aeruginosa strain WH-SGI-V-07388 WH-SGI-V-07388_contig45, whole genome shotgun sequence (26588 bp)
Overview 1 RT 1: 7947-13448 bp Neighborhood of RT #1 [7947, 14404] DEXHc_Snf SF2_C_SNF RVT_N RVT-GII GIIM HNH DEXHc_Snf AdoMet_MTases Feature: gene Location: 7947-8403 bp Feature: gene Location: 8498-9742 bp Feature: domain Description: DEXHc_Snf Location: 8519-8672 bp Feature: domain Description: DEXHc_Snf Location: 8519-8672 bp Feature: domain Description: SF2_C_SNF Location: 9200-9578 bp Feature: domain Description: SF2 _C_SNF Location: 92 00-9578 bp Feature: gene Location: 9825-11405 bp Ori: KSH63041.1 Feature: domain Description: RVT_N Location: 9882-10119 bp Feature: domain Description: RVT_N Location: 9882 -10119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10170-10821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10170-1082 1 bp Feature: domain Description: GIIM Note: maturase Location: 10875-11106 bp Feature: domain Description: GIIM Note: maturase Location: 10875-11106 bp Feature: domain Description: HNH Note: nucleases Location: 11259-11358 bp Feature: domain Description: HNH Note: nucleases Location: 112 59-11358 bp Feature: gene Location: 12024-12854 bp Feature: domain Description: DEXHc_Snf Location: 12216-12462 bp Feature: domain Description: DEXHc_Snf Location: 12 2 16-12 462 bp Feature: gene Location: 12959-14404 bp Ori: KSH63042.1 Feature: domain Description: AdoMet_MTases Location: 13082-13448 bp Feature: domain Description: AdoMet_MTases Location: 13082 -13448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), AdoMet_MTases (cl17173)