myRT

myRT report for GCA_001451265.1_WH-SGI-V-07404

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Seq: LLOR01000088.1 Pseudomonas aeruginosa strain WH-SGI-V-07404 WH-SGI-V-07404_contig5, whole genome shotgun sequence (414816 bp)
Overview 1 RT 1: 1-4135 bp Neighborhood of RT #1 [1, 4146] rve_3 RVT-UG5 nitrilase AlpA COG4127 Feature: gene Location: 1-210 bp Ori: OPD94582.1 Feature: domain Description: rve_3 Location: 4-127 bp Feature: domain Description: rve_3 Location: 4-1 27 bp Feature: gene Location: 295-2784 bp Ori: KSI24155.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 301-736 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 301 -736 bp Feature: domain Description: nitrilase Location: 2098-2680 bp Feature: domain Description: nitrilase Location: 2098-2680 bp Feature: gene Location: 2937-3149 bp Ori: OPD94573.1 Feature: domain Description: AlpA Location: 2940-3111 bp Feature: domain Description: AlpA Location: 2940-31 1 1 bp Feature: gene Location: 3154-4146 bp Ori: KSI24156.1 Feature: domain Description: COG4127 Location: 3160-4135 bp Feature: domain Description: COG41 27 Location: 31 60-41 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-UG5, nitrilase (cl11424), AlpA (COG3311), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily )

Seq: LLOR01000077.1 Pseudomonas aeruginosa strain WH-SGI-V-07404 WH-SGI-V-07404_contig4, whole genome shotgun sequence (417820 bp)
Overview 1 RT 1: 136660-142828 bp Neighborhood of RT #1 [136660, 143784] InsE DEXHc_Snf SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf AdoMet_MTases Feature: gene Location: 136660-136953 bp Ori: KSI25984.1 Feature: domain Description: InsE Location: 136669-136939 bp Feature: domain Description: InsE Location: 136669-136939 bp Feature: gene Location: 137567-138811 bp Feature: domain Description: DEXHc_Snf Location: 137588-137741 bp Feature: domain Description: DEXHc_Snf Location: 137588-137741 bp Feature: domain Description: SF2_C_SNF Location: 138272-138647 bp Feature: domain Description: SF2 _C_SNF Location: 1382 72 -138647 bp Feature: gene Location: 138894-140612 bp Ori: KSI25985.1 Feature: domain Description: RVT_N Location: 138951-139188 bp Feature: domain Description: RVT_N Location: 138951-139188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139239-139890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1392 39-139890 bp Feature: domain Description: GIIM Note: maturase Location: 139944-140175 bp Feature: domain Description: GIIM Note: maturase Location: 139944-140175 bp Feature: domain Description: HNHc Note: nucleases Location: 140409-140565 bp Feature: domain Description: HNHc Note: nucleases Location: 140409-140565 bp Feature: gene Location: 141209-142234 bp Ori: OPD94671.1 Feature: domain Description: DEXHc_Snf Location: 141401-141647 bp Feature: domain Description: DEXHc_Snf Location: 141401-141647 bp Feature: gene Location: 142339-143784 bp Ori: KSI25986.1 Feature: domain Description: AdoMet_MTases Location: 142462-142828 bp Feature: domain Description: AdoMet_MTases Location: 142 462 -142 82 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), DEXHc_Snf (cd17919), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173)