myRT

myRT report for GCA_001451295.1_WH-SGI-V-07408

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Seq: LLOV01000046.1 Pseudomonas aeruginosa strain WH-SGI-V-07408 WH-SGI-V-07408_contig4, whole genome shotgun sequence (414058 bp)
Overview 1 RT 1: 339251-349556 bp Neighborhood of RT #1 [339251, 349558] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 339251-340372 bp Feature: domain Description: COG3177 Location: 339269-340361 bp Feature: domain Description: COG31 77 Location: 339269-340361 bp Feature: gene Location: 340631-340767 bp Feature: gene Location: 341095-342780 bp Feature: RT Description: RVT_N Location: 341152-341392 bp Feature: RT Description: RVT_N Location: 341 1 52-341 392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341440-342076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 440-342076 bp Feature: domain Description: GIIM Note: maturase Location: 342130-342361 bp Feature: domain Description: GIIM Note: maturase Location: 3421 30-342361 bp Feature: domain Description: HNH Note: nucleases Location: 342613-342751 bp Feature: domain Description: HNH Note: nucleases Location: 34261 3-342751 bp Feature: gene Location: 343861-347598 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 343969-344626 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 343969-344626 bp Feature: domain Description: PRK09776 Location: 344839-345310 bp Feature: domain Description: PRK09776 Location: 344839-34531 0 bp Feature: domain Description: PAS Location: 345355-345892 bp Feature: domain Description: PAS Location: 345355-345892 bp Feature: domain Description: PRK10060 Location: 345901-347548 bp Feature: domain Description: PRK1 0060 Location: 345901 -347548 bp Feature: gene Location: 347705-349558 bp Feature: domain Description: PRK05658 Location: 347717-349556 bp Feature: domain Description: PRK05658 Location: 34771 7-349556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)