myRT

myRT report for GCA_001451425.1_WH-SGI-V-07421

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Seq: LLPI01000064.1 Pseudomonas aeruginosa strain WH-SGI-V-07421 WH-SGI-V-07421_contig34, whole genome shotgun sequence (54531 bp)
Overview 1 RT 1: 18650-26849 bp 2 RT 2: 43114-53808 bp Neighborhood of RT #1 [18650, 26857] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [43114, 53808] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH INT_Rci_Hp1_C Feature: gene Location: 18650-19666 bp Feature: domain Description: COG3178 Location: 18653-19652 bp Feature: domain Description: COG31 78 Location: 1 8653-1 9652 bp Feature: gene Location: 20539-20751 bp Feature: gene Location: 20938-22650 bp Feature: RT Description: RVT_N Location: 20995-21238 bp Feature: RT Description: RVT_N Location: 20995-21 238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21283-21916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 283-21 91 6 bp Feature: domain Description: YkfC Location: 22129-22279 bp Feature: domain Description: YkfC Location: 221 29-22279 bp Feature: domain Description: HNH Note: nucleases Location: 22456-22594 bp Feature: domain Description: HNH Note: nucleases Location: 22456-22594 bp Feature: gene Location: 22783-25584 bp Feature: domain Description: LptD Location: 22978-25570 bp Feature: domain Description: LptD Location: 22978-25570 bp Feature: gene Location: 25565-26857 bp Feature: domain Description: PRK10770 Location: 25655-26849 bp Feature: domain Description: PRK1 0770 Location: 25655-26849 bp Feature: gene Location: 43114-44967 bp Feature: domain Description: PRK05658 Location: 43126-44965 bp Feature: domain Description: PRK05658 Location: 431 26-44965 bp Feature: gene Location: 45074-48811 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 45182-45839 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 451 82-45839 bp Feature: domain Description: PRK09776 Location: 46052-46523 bp Feature: domain Description: PRK09776 Location: 46052-46523 bp Feature: domain Description: PAS Location: 46568-47105 bp Feature: domain Description: PAS Location: 46568-471 05 bp Feature: domain Description: PRK10060 Location: 47114-48761 bp Feature: domain Description: PRK1 0060 Location: 471 1 4-48761 bp Feature: gene Location: 49892-51577 bp Feature: RT Description: RVT_N Location: 49949-50189 bp Feature: RT Description: RVT_N Location: 49949-501 89 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50237-50873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50237-50873 bp Feature: domain Description: GIIM Note: maturase Location: 50927-51158 bp Feature: domain Description: GIIM Note: maturase Location: 50927-51 1 58 bp Feature: domain Description: HNH Note: nucleases Location: 51410-51548 bp Feature: domain Description: HNH Note: nucleases Location: 51 41 0-51 548 bp Feature: gene Location: 51879-52973 bp Feature: domain Description: INT_Rci_Hp1_C Location: 52389-52890 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 52389-52890 bp Feature: gene Location: 53050-53808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), INT_Rci_Hp1_C (cd00796)