myRT

myRT report for GCA_001451455.1_WH-SGI-V-07424

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Seq: LLPL01000049.1 Pseudomonas aeruginosa strain WH-SGI-V-07424 WH-SGI-V-07424_contig4, whole genome shotgun sequence (483373 bp)
Overview 1 RT 1: 71704-82001 bp Neighborhood of RT #1 [71704, 82012] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 71704-73557 bp Feature: domain Description: PRK05658 Location: 71716-73555 bp Feature: domain Description: PRK05658 Location: 71 71 6-73555 bp Feature: gene Location: 73664-77401 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73772-74429 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73772-74429 bp Feature: domain Description: PRK09776 Location: 74642-75113 bp Feature: domain Description: PRK09776 Location: 74642-751 1 3 bp Feature: domain Description: PAS Location: 75170-75695 bp Feature: domain Description: PAS Location: 751 70-75695 bp Feature: domain Description: PRK10060 Location: 75704-77351 bp Feature: domain Description: PRK1 0060 Location: 75704-77351 bp Feature: gene Location: 78482-80167 bp Feature: RT Description: RVT_N Location: 78539-78779 bp Feature: RT Description: RVT_N Location: 78539-78779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78827-79463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78827-79463 bp Feature: domain Description: GIIM Note: maturase Location: 79517-79748 bp Feature: domain Description: GIIM Note: maturase Location: 7951 7-79748 bp Feature: domain Description: HNH Note: nucleases Location: 80000-80138 bp Feature: domain Description: HNH Note: nucleases Location: 80000-801 38 bp Feature: gene Location: 80495-80632 bp Feature: gene Location: 80891-82012 bp Feature: domain Description: COG3177 Location: 80909-82001 bp Feature: domain Description: COG31 77 Location: 80909-82001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )