myRT

myRT report for GCA_001451505.1_WH-SGI-V-07426

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Seq: LLPN01000035.1 Pseudomonas aeruginosa strain WH-SGI-V-07426 WH-SGI-V-07426_contig13, whole genome shotgun sequence (180912 bp)
Overview 1 RT 1: 12036-17838 bp Neighborhood of RT #1 [12036, 17873] DUF3800 RVT-UG1 HTH_ARSR AlpA Feature: gene Location: 12036-12743 bp Ori: KSJ44641.1 Feature: domain Description: DUF3800 Location: 12054-12597 bp Feature: domain Description: DUF3800 Location: 1 2054-1 2597 bp Feature: gene Location: 12740-13819 bp Feature: gene Location: 14394-16739 bp Ori: OPE00335.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 15195-15732 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 51 95-1 5732 bp Feature: gene Location: 17051-17581 bp Ori: OPE00341.1 Feature: domain Description: HTH_ARSR Location: 17165-17291 bp Feature: domain Description: HTH_ARSR Location: 1 71 65-1 7291 bp Feature: gene Location: 17634-17873 bp Ori: OPE00336.1 Feature: domain Description: AlpA Location: 17670-17838 bp Feature: domain Description: AlpA Location: 1 7670-1 7838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3800 (pfam12686), RVT-UG1, HTH_ARSR (smart00418), AlpA (COG3311)

Seq: LLPN01000105.1 Pseudomonas aeruginosa strain WH-SGI-V-07426 WH-SGI-V-07426_contig64, whole genome shotgun sequence (2770 bp)
Overview 1 RT 1: 65-2475 bp Neighborhood of RT #1 [65, 2696] IS5 RVT_N RVT-GII GIIM Feature: gene Location: 65-595 bp Feature: domain Description: IS5 Location: 254-587 bp Feature: domain Description: IS5 Location: 2 54-587 bp Feature: gene Location: 1191-2696 bp Ori: KSJ28855.1 Feature: domain Description: RVT_N Location: 1272-1497 bp Feature: domain Description: RVT_N Location: 12 72 -1497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-2190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-2 190 bp Feature: domain Description: GIIM Note: maturase Location: 2241-2475 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 41-2 475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LLPN01000073.1 Pseudomonas aeruginosa strain WH-SGI-V-07426 WH-SGI-V-07426_contig35, whole genome shotgun sequence (65593 bp)
Overview 1 RT 1: 62477-65593 bp Neighborhood of RT #1 [62477, 65593] COG3178 RVT_N RVT-GII Feature: gene Location: 62477-63493 bp Ori: KSJ37942.1 Feature: domain Description: COG3178 Location: 62480-63479 bp Feature: domain Description: COG3 178 Location: 62480-63 479 bp Feature: gene Location: 64366-64578 bp Feature: gene Location: 64765-65379 bp Feature: domain Description: RVT_N Location: 64822-65065 bp Feature: domain Description: RVT_N Location: 64822-65065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65110-65359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65110-653 59 bp Feature: gene Location: 65386-65593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII

Seq: LLPN01000085.1 Pseudomonas aeruginosa strain WH-SGI-V-07426 WH-SGI-V-07426_contig46, whole genome shotgun sequence (36328 bp)
Overview 1 RT 1: 1366-14513 bp 2 RT 2: 30772-36328 bp Neighborhood of RT #1 [1366, 14515] FRG ABC_cobalt_CbiO_domain1 SbcC AAA_21 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [30772, 36328] PRK10770 LptD RVT-GII GIIM HNH InsE Feature: gene Location: 1366-2673 bp Ori: KSJ33738.1 Feature: domain Description: FRG Location: 1429-1708 bp Feature: domain Description: FRG Location: 14 29-1708 bp Feature: gene Location: 2701-5685 bp Ori: KSJ33739.1 Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 3676-3790 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 3676-3790 bp Feature: domain Description: SbcC Location: 4084-4816 bp Feature: domain Description: SbcC Location: 4 084 -4 816 bp Feature: domain Description: AAA_21 Location: 5284-5497 bp Feature: domain Description: AAA_21 Location: 5284 -54 97 bp Feature: gene Location: 6052-7737 bp Ori: KSJ33740.1 Feature: domain Description: RVT_N Location: 6109-6349 bp Feature: domain Description: RVT_N Location: 6109-634 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6397-7033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6397-7033 bp Feature: domain Description: GIIM Note: maturase Location: 7087-7318 bp Feature: domain Description: GIIM Note: maturase Location: 7087-7318 bp Feature: domain Description: HNH Note: nucleases Location: 7570-7708 bp Feature: domain Description: HNH Note: nucleases Location: 7570-7708 bp Feature: gene Location: 8818-12555 bp Ori: KSJ33741.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 8926-9583 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 8926-9583 bp Feature: domain Description: PRK09776 Location: 9796-10267 bp Feature: domain Description: PRK09776 Location: 9796-10267 bp Feature: domain Description: PAS Location: 10312-10849 bp Feature: domain Description: PAS Location: 10312-1084 9 bp Feature: domain Description: PRK10060 Location: 10858-12505 bp Feature: domain Description: PRK10060 Location: 10858-12505 bp Feature: gene Location: 12662-14515 bp Ori: KSJ33742.1 Feature: domain Description: PRK05658 Location: 12674-14513 bp Feature: domain Description: PRK05658 Location: 12674 -14 513 bp Feature: gene Location: 30772-32064 bp Ori: KSJ33760.1 Feature: domain Description: PRK10770 Location: 30862-32056 bp Feature: domain Description: PRK10770 Location: 30862-32056 bp Feature: gene Location: 32045-34828 bp Ori: KSJ33761.1 Feature: domain Description: LptD Location: 32240-34814 bp Feature: domain Description: LptD Location: 3224 0-34 814 bp Feature: gene Location: 34961-36109 bp Ori: OPD99841.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34982-35375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 982-35375 bp Feature: domain Description: GIIM Note: maturase Location: 35432-35663 bp Feature: domain Description: GIIM Note: maturase Location: 354 32-35663 bp Feature: domain Description: HNH Note: nucleases Location: 35915-36053 bp Feature: domain Description: HNH Note: nucleases Location: 35915-36053 bp Feature: gene Location: 36160-36328 bp Ori: OPD99842.1 Feature: domain Description: InsE Location: 36208-36328 bp Feature: domain Description: InsE Location: 36208-36328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), ABC_cobalt_CbiO_domain1 (cd03225), SbcC (COG0419), AAA_21 (pfam13304), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), InsE (COG2963)