myRT

myRT report for GCA_001451535.1_WH-SGI-V-07427

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Seq: LLPO01000043.1 Pseudomonas aeruginosa strain WH-SGI-V-07427 WH-SGI-V-07427_contig2, whole genome shotgun sequence (469655 bp)
Overview 1 RT 1: 384654-394960 bp 2 RT 2: 411218-419399 bp Neighborhood of RT #1 [384654, 394962] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [411218, 419413] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 384654-385775 bp Feature: domain Description: COG3177 Location: 384672-385764 bp Feature: domain Description: COG31 77 Location: 384672-385764 bp Feature: gene Location: 386034-386171 bp Feature: gene Location: 386499-388184 bp Feature: RT Description: RVT_N Location: 386556-386796 bp Feature: RT Description: RVT_N Location: 386556-386796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386844-387480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386844-387480 bp Feature: domain Description: GIIM Note: maturase Location: 387534-387765 bp Feature: domain Description: GIIM Note: maturase Location: 387534-387765 bp Feature: domain Description: HNH Note: nucleases Location: 388017-388155 bp Feature: domain Description: HNH Note: nucleases Location: 38801 7-3881 55 bp Feature: gene Location: 389265-393002 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 389373-390030 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 389373-390030 bp Feature: domain Description: PRK09776 Location: 390243-390714 bp Feature: domain Description: PRK09776 Location: 390243-39071 4 bp Feature: domain Description: PAS Location: 390771-391296 bp Feature: domain Description: PAS Location: 390771 -391 296 bp Feature: domain Description: PRK10060 Location: 391305-392952 bp Feature: domain Description: PRK1 0060 Location: 391 305-392952 bp Feature: gene Location: 393109-394962 bp Feature: domain Description: PRK05658 Location: 393121-394960 bp Feature: domain Description: PRK05658 Location: 3931 21 -394960 bp Feature: gene Location: 411218-412510 bp Feature: domain Description: PRK10770 Location: 411308-412502 bp Feature: domain Description: PRK1 0770 Location: 41 1 308-41 2502 bp Feature: gene Location: 412491-415280 bp Feature: domain Description: LptD Location: 412686-415266 bp Feature: domain Description: LptD Location: 41 2686-41 5266 bp Feature: gene Location: 415413-417125 bp Feature: RT Description: RVT_N Location: 415470-415713 bp Feature: RT Description: RVT_N Location: 41 5470-41 571 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415758-416391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 5758-41 6391 bp Feature: domain Description: YkfC Location: 416604-416754 bp Feature: domain Description: YkfC Location: 41 6604-41 6754 bp Feature: domain Description: HNH Note: nucleases Location: 416931-417069 bp Feature: domain Description: HNH Note: nucleases Location: 41 6931 -41 7069 bp Feature: gene Location: 417312-417524 bp Feature: gene Location: 418397-419413 bp Feature: domain Description: COG3178 Location: 418400-419399 bp Feature: domain Description: COG31 78 Location: 41 8400-41 9399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )