myRT

myRT report for GCA_001451625.1_WH-SGI-V-07487

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Seq: LLPT01000047.1 Pseudomonas aeruginosa strain WH-SGI-V-07487 WH-SGI-V-07487_contig2, whole genome shotgun sequence (414794 bp)
Overview 1 RT 1: 50431-58631 bp 2 RT 2: 74896-85193 bp Neighborhood of RT #1 [50431, 58639] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74896, 85204] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50431-51447 bp Feature: domain Description: COG3178 Location: 50434-51433 bp Feature: domain Description: COG31 78 Location: 50434-51 433 bp Feature: gene Location: 52320-52532 bp Feature: gene Location: 52720-54432 bp Feature: RT Description: RVT_N Location: 52777-53020 bp Feature: RT Description: RVT_N Location: 52777-53020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53065-53701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53065-53701 bp Feature: domain Description: YkfC Location: 53911-54061 bp Feature: domain Description: YkfC Location: 5391 1 -54061 bp Feature: domain Description: HNH Note: nucleases Location: 54238-54376 bp Feature: domain Description: HNH Note: nucleases Location: 54238-54376 bp Feature: gene Location: 54565-57366 bp Feature: domain Description: LptD Location: 54760-57352 bp Feature: domain Description: LptD Location: 54760-57352 bp Feature: gene Location: 57347-58639 bp Feature: domain Description: PRK10770 Location: 57437-58631 bp Feature: domain Description: PRK1 0770 Location: 57437-58631 bp Feature: gene Location: 74896-76749 bp Feature: domain Description: PRK05658 Location: 74908-76747 bp Feature: domain Description: PRK05658 Location: 74908-76747 bp Feature: gene Location: 76856-80593 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76964-77621 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76964-77621 bp Feature: domain Description: PRK09776 Location: 77834-78305 bp Feature: domain Description: PRK09776 Location: 77834-78305 bp Feature: domain Description: PAS Location: 78365-78887 bp Feature: domain Description: PAS Location: 78365-78887 bp Feature: domain Description: PRK10060 Location: 78896-80543 bp Feature: domain Description: PRK1 0060 Location: 78896-80543 bp Feature: gene Location: 81674-83359 bp Feature: RT Description: RVT_N Location: 81731-81971 bp Feature: RT Description: RVT_N Location: 81 731 -81 971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82019-82655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8201 9-82655 bp Feature: domain Description: GIIM Note: maturase Location: 82709-82940 bp Feature: domain Description: GIIM Note: maturase Location: 82709-82940 bp Feature: domain Description: HNH Note: nucleases Location: 83192-83330 bp Feature: domain Description: HNH Note: nucleases Location: 831 92-83330 bp Feature: gene Location: 83688-83824 bp Feature: gene Location: 84083-85204 bp Feature: domain Description: COG3177 Location: 84101-85193 bp Feature: domain Description: COG31 77 Location: 841 01 -851 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )