myRT

myRT report for GCA_001451745.1_WH-SGI-V-07494

Download annotations/find similar RTs

Seq: LLQA01000108.1 Pseudomonas aeruginosa strain WH-SGI-V-07494 WH-SGI-V-07494_contig72, whole genome shotgun sequence (1858 bp)
Overview 1 RT 1: 65-1235 bp Neighborhood of RT #1 [65, 1333] RVT-GII GIIM Feature: gene Location: 65-1333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: domain Description: GIIM Note: maturase Location: 1013-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 3-1 235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LLQA01000063.1 Pseudomonas aeruginosa strain WH-SGI-V-07494 WH-SGI-V-07494_contig31, whole genome shotgun sequence (83011 bp)
Overview 1 RT 1: 71594-82288 bp Neighborhood of RT #1 [71594, 82288] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH INT_Rci_Hp1_C Feature: gene Location: 71594-73447 bp Feature: domain Description: PRK05658 Location: 71606-73445 bp Feature: domain Description: PRK05658 Location: 71606-73445 bp Feature: gene Location: 73554-77291 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73662-74319 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 73662 -74319 bp Feature: domain Description: PRK09776 Location: 74532-75003 bp Feature: domain Description: PRK09776 Location: 74532 -75003 bp Feature: domain Description: PAS Location: 75048-75585 bp Feature: domain Description: PAS Location: 75048-75585 bp Feature: domain Description: PRK10060 Location: 75594-77241 bp Feature: domain Description: PRK10060 Location: 75594-772 41 bp Feature: gene Location: 78372-80057 bp Feature: RT Description: RVT_N Location: 78429-78669 bp Feature: RT Description: RVT_N Location: 7842 9-78669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78717-79353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78717-79353 bp Feature: domain Description: GIIM Note: maturase Location: 79407-79638 bp Feature: domain Description: GIIM Note: maturase Location: 79407-79638 bp Feature: domain Description: HNH Note: nucleases Location: 79890-80028 bp Feature: domain Description: HNH Note: nucleases Location: 79890-8002 8 bp Feature: gene Location: 80359-81453 bp Feature: domain Description: INT_Rci_Hp1_C Location: 80869-81370 bp Feature: domain Description: INT_Rci_Hp1_C Location: 80869-81370 bp Feature: gene Location: 81530-82288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), INT_Rci_Hp1_C (cd00796)

Seq: LLQA01000076.1 Pseudomonas aeruginosa strain WH-SGI-V-07494 WH-SGI-V-07494_contig43, whole genome shotgun sequence (22007 bp)
Overview 1 RT 1: 234-3248 bp Neighborhood of RT #1 [234, 3277] IS5 RVT-GII InsE TnpB_IS66 Feature: gene Location: 234-746 bp Feature: domain Description: IS5 Location: 423-747 bp Feature: domain Description: IS5 Location: 423 -747 bp Feature: gene Location: 963-1148 bp Feature: gene Location: 1084-2484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1798-2410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1798-2410 bp Feature: gene Location: 2640-2945 bp Feature: domain Description: InsE Location: 2646-2838 bp Feature: domain Description: InsE Location: 2646-283 8 bp Feature: gene Location: 2939-3277 bp Feature: domain Description: TnpB_IS66 Location: 2960-3248 bp Feature: domain Description: TnpB_IS66 Location: 2960-3 248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS5 (COG3039), InsE (COG2963), TnpB_IS66 (pfam05717)