myRT

myRT report for GCA_001451755.1_WH-SGI-V-07495

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Seq: LLQB01000064.1 Pseudomonas aeruginosa strain WH-SGI-V-07495 WH-SGI-V-07495_contig7, whole genome shotgun sequence (441057 bp)
Overview 1 RT 1: 102049-112346 bp Neighborhood of RT #1 [102049, 112357] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 102049-103902 bp Ori: KSJ83278.1 Feature: domain Description: PRK05658 Location: 102061-103900 bp Feature: domain Description: PRK05658 Location: 1 02061 -1 03900 bp Feature: gene Location: 104009-107746 bp Ori: KSJ83279.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 104117-104774 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 041 1 7-1 04774 bp Feature: domain Description: PRK09776 Location: 104987-105458 bp Feature: domain Description: PRK09776 Location: 1 04987-1 05458 bp Feature: domain Description: PAS Location: 105548-106040 bp Feature: domain Description: PAS Location: 1 05548-1 06040 bp Feature: domain Description: PRK10060 Location: 106049-107696 bp Feature: domain Description: PRK1 0060 Location: 1 06049-1 07696 bp Feature: gene Location: 108827-110512 bp Ori: KSJ83280.1 Feature: domain Description: RVT_N Location: 108884-109124 bp Feature: domain Description: RVT_N Location: 1 08884-1 091 24 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109172-109808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 091 72-1 09808 bp Feature: domain Description: GIIM Note: maturase Location: 109862-110093 bp Feature: domain Description: GIIM Note: maturase Location: 1 09862-1 1 0093 bp Feature: domain Description: HNH Note: nucleases Location: 110345-110483 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 0345-1 1 0483 bp Feature: gene Location: 110840-110977 bp Feature: gene Location: 111236-112357 bp Ori: KSJ83282.1 Feature: domain Description: COG3177 Location: 111254-112346 bp Feature: domain Description: COG31 77 Location: 1 1 1 254-1 1 2346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: LLQB01000017.1 Pseudomonas aeruginosa strain WH-SGI-V-07495 WH-SGI-V-07495_contig24, whole genome shotgun sequence (70102 bp)
Overview 1 RT 1: 28020-31558 bp Neighborhood of RT #1 [28020, 31558] RVT-UG17 SLATT_5 Feature: gene Location: 28020-28445 bp Feature: gene Location: 28462-28932 bp Feature: gene Location: 28974-30338 bp Ori: KSJ91167.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 29202-29805 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 92 02 -2 9805 bp Feature: gene Location: 30335-30877 bp Ori: OPE01818.1 Feature: domain Description: SLATT_5 Location: 30341-30851 bp Feature: domain Description: SLATT_5 Location: 30341-30851 bp Feature: gene Location: 31238-31558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160)

Seq: LLQB01000004.1 Pseudomonas aeruginosa strain WH-SGI-V-07495 WH-SGI-V-07495_contig12, whole genome shotgun sequence (219483 bp)
Overview 1 RT 1: 2-5573 bp Neighborhood of RT #1 [2, 5770] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 2-443 bp Feature: domain Description: DUF772 Location: 83-278 bp Feature: domain Description: DUF772 Location: 83 -278 bp Feature: gene Location: 963-2231 bp Ori: KSJ96270.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-183 3 bp Feature: domain Description: GIIM Note: maturase Location: 1911-2133 bp Feature: domain Description: GIIM Note: maturase Location: 1911-213 3 bp Feature: gene Location: 2381-2707 bp Feature: gene Location: 4226-5770 bp Ori: KSJ96271.1 Feature: domain Description: CHD Location: 4442-4856 bp Feature: domain Description: CHD Location: 4442-4856 bp Feature: domain Description: CHD Location: 5084-5573 bp Feature: domain Description: CHD Location: 5084-5573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)