myRT

myRT report for GCA_001451805.1_WH-SGI-V-07497

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Seq: LLQD01000069.1 Pseudomonas aeruginosa strain WH-SGI-V-07497 WH-SGI-V-07497_contig26, whole genome shotgun sequence (90530 bp)
Overview 1 RT 1: 994-4547 bp Neighborhood of RT #1 [994, 4654] InsE RVT-GII GIIM PHA02517 PIN_NicB-like Feature: gene Location: 994-1673 bp Feature: domain Description: InsE Location: 1003-1279 bp Feature: domain Description: InsE Location: 1 003-1 279 bp Feature: gene Location: 1840-2190 bp Feature: gene Location: 2187-3428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2385-3042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2385-3042 bp Feature: domain Description: GIIM Note: maturase Location: 3120-3342 bp Feature: domain Description: GIIM Note: maturase Location: 31 20-3342 bp Feature: gene Location: 3508-3978 bp Feature: domain Description: PHA02517 Location: 3511-3967 bp Feature: domain Description: PHA0251 7 Location: 351 1 -3967 bp Feature: gene Location: 3917-4654 bp Feature: domain Description: PIN_NicB-like Location: 3926-4547 bp Feature: domain Description: PIN_NicB-like Location: 3926-4547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PIN_NicB-like (cd18722), InsE (COG2963)

Seq: LLQD01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07497 WH-SGI-V-07497_contig11, whole genome shotgun sequence (194498 bp)
Overview 1 RT 1: 94831-98444 bp Neighborhood of RT #1 [94831, 98444] Avd_like RVT-DGRs Feature: gene Location: 94831-95493 bp Feature: gene Location: 95508-95870 bp Feature: domain Description: Avd_like Location: 95535-95847 bp Feature: domain Description: Avd_like Location: 95535-95847 bp Feature: gene Location: 96193-97263 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96349-97036 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96349-97036 bp Feature: gene Location: 97287-97574 bp Feature: gene Location: 98160-98444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: LLQD01000073.1 Pseudomonas aeruginosa strain WH-SGI-V-07497 WH-SGI-V-07497_contig3, whole genome shotgun sequence (414524 bp)
Overview 1 RT 1: 50299-58468 bp 2 RT 2: 74732-85028 bp Neighborhood of RT #1 [50299, 58476] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74732, 85039] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50299-51315 bp Feature: domain Description: COG3178 Location: 50302-51301 bp Feature: domain Description: COG3 178 Location: 503 02-513 01 bp Feature: gene Location: 52188-52400 bp Feature: gene Location: 52587-54299 bp Feature: RT Description: RVT_N Location: 52644-52887 bp Feature: RT Description: RVT_N Location: 52644-52887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52932-53565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5293 2-53 565 bp Feature: domain Description: YkfC Location: 53778-53928 bp Feature: domain Description: YkfC Location: 53 778-53 928 bp Feature: domain Description: HNH Note: nucleases Location: 54105-54243 bp Feature: domain Description: HNH Note: nucleases Location: 54105-54243 bp Feature: gene Location: 54432-57203 bp Feature: domain Description: LptD Location: 54627-57189 bp Feature: domain Description: LptD Location: 54627-57189 bp Feature: gene Location: 57184-58476 bp Feature: domain Description: PRK10770 Location: 57274-58468 bp Feature: domain Description: PRK10770 Location: 57274-58468 bp Feature: gene Location: 74732-76585 bp Feature: domain Description: PRK05658 Location: 74744-76583 bp Feature: domain Description: PRK05658 Location: 74744-76583 bp Feature: gene Location: 76692-80429 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76800-77457 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76800-77457 bp Feature: domain Description: PRK09776 Location: 77670-78141 bp Feature: domain Description: PRK09776 Location: 77670-78141 bp Feature: domain Description: PAS Location: 78198-78723 bp Feature: domain Description: PAS Location: 78198-78723 bp Feature: domain Description: PRK10060 Location: 78735-80379 bp Feature: domain Description: PRK10060 Location: 7873 5-803 79 bp Feature: gene Location: 81510-83195 bp Feature: RT Description: RVT_N Location: 81567-81807 bp Feature: RT Description: RVT_N Location: 81567-81807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81855-82491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81855-82491 bp Feature: domain Description: GIIM Note: maturase Location: 82545-82776 bp Feature: domain Description: GIIM Note: maturase Location: 82545-82776 bp Feature: domain Description: HNH Note: nucleases Location: 83028-83166 bp Feature: domain Description: HNH Note: nucleases Location: 83 028-83 166 bp Feature: gene Location: 83523-83659 bp Feature: gene Location: 83918-85039 bp Feature: domain Description: COG3177 Location: 83936-85028 bp Feature: domain Description: COG3 177 Location: 83 93 6-85028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: LLQD01000088.1 Pseudomonas aeruginosa strain WH-SGI-V-07497 WH-SGI-V-07497_contig43, whole genome shotgun sequence (25847 bp)
Overview 1 RT 1: 2971-7544 bp Neighborhood of RT #1 [2971, 7576] RVT-GII GIIM PinE IS5 Feature: gene Location: 2971-3459 bp Feature: gene Location: 3989-4246 bp Feature: gene Location: 4788-6188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5070-5685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5070-5685 bp Feature: domain Description: GIIM Note: maturase Location: 5742-5955 bp Feature: domain Description: GIIM Note: maturase Location: 574 2-5955 bp Feature: gene Location: 6377-6976 bp Feature: domain Description: PinE Location: 6380-6932 bp Feature: domain Description: PinE Location: 6380-6932 bp Feature: gene Location: 7160-7576 bp Feature: domain Description: IS5 Location: 7196-7544 bp Feature: domain Description: IS5 Location: 7196-754 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PinE (COG1961), IS5 (COG3039)