myRT

myRT report for GCA_001451835.1_WH-SGI-V-07500

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Seq: LLQG01000045.1 Pseudomonas aeruginosa strain WH-SGI-V-07500 WH-SGI-V-07500_contig5, whole genome shotgun sequence (416583 bp)
Overview 1 RT 1: 329580-339886 bp 2 RT 2: 356145-364321 bp Neighborhood of RT #1 [329580, 339888] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [356145, 364335] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 329580-330701 bp Feature: domain Description: COG3177 Location: 329598-330690 bp Feature: domain Description: COG31 77 Location: 329598-330690 bp Feature: gene Location: 330960-331097 bp Feature: gene Location: 331425-333110 bp Feature: RT Description: RVT_N Location: 331482-331722 bp Feature: RT Description: RVT_N Location: 331 482-331 722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331770-332406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 770-332406 bp Feature: domain Description: GIIM Note: maturase Location: 332460-332691 bp Feature: domain Description: GIIM Note: maturase Location: 332460-332691 bp Feature: domain Description: HNH Note: nucleases Location: 332943-333081 bp Feature: domain Description: HNH Note: nucleases Location: 332943-333081 bp Feature: gene Location: 334191-337928 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 334299-334956 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 334299-334956 bp Feature: domain Description: PRK09776 Location: 335169-335640 bp Feature: domain Description: PRK09776 Location: 3351 69-335640 bp Feature: domain Description: PAS Location: 335697-336222 bp Feature: domain Description: PAS Location: 335697-336222 bp Feature: domain Description: PRK10060 Location: 336231-337878 bp Feature: domain Description: PRK1 0060 Location: 336231 -337878 bp Feature: gene Location: 338035-339888 bp Feature: domain Description: PRK05658 Location: 338047-339886 bp Feature: domain Description: PRK05658 Location: 338047-339886 bp Feature: gene Location: 356145-357437 bp Feature: domain Description: PRK10770 Location: 356235-357429 bp Feature: domain Description: PRK1 0770 Location: 356235-357429 bp Feature: gene Location: 357418-360201 bp Feature: domain Description: LptD Location: 357613-360187 bp Feature: domain Description: LptD Location: 35761 3-3601 87 bp Feature: gene Location: 360334-362046 bp Feature: RT Description: RVT_N Location: 360391-360634 bp Feature: RT Description: RVT_N Location: 360391 -360634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360679-361315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360679-361 31 5 bp Feature: domain Description: YkfC Location: 361522-361675 bp Feature: domain Description: YkfC Location: 361 522-361 675 bp Feature: domain Description: HNH Note: nucleases Location: 361852-361990 bp Feature: domain Description: HNH Note: nucleases Location: 361 852-361 990 bp Feature: gene Location: 362234-362446 bp Feature: gene Location: 363319-364335 bp Feature: domain Description: COG3178 Location: 363322-364321 bp Feature: domain Description: COG31 78 Location: 363322-364321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLQG01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07500 WH-SGI-V-07500_contig1, whole genome shotgun sequence (1345319 bp)
Overview 1 RT 1: 2-5573 bp Neighborhood of RT #1 [2, 5770] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 2-443 bp Feature: domain Description: DUF772 Location: 83-278 bp Feature: domain Description: DUF772 Location: 83-2 78 bp Feature: gene Location: 963-2231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-1833 bp Feature: domain Description: GIIM Note: maturase Location: 1911-2133 bp Feature: domain Description: GIIM Note: maturase Location: 1911-2 133 bp Feature: gene Location: 2381-2707 bp Feature: gene Location: 4226-5770 bp Feature: domain Description: CHD Location: 4442-4856 bp Feature: domain Description: CHD Location: 4442 -4856 bp Feature: domain Description: CHD Location: 5084-5573 bp Feature: domain Description: CHD Location: 5084-5573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)