myRT

myRT report for GCA_001451895.1_WH-SGI-V-07505

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Seq: LLQL01000019.1 Pseudomonas aeruginosa strain WH-SGI-V-07505 WH-SGI-V-07505_contig26, whole genome shotgun sequence (69788 bp)
Overview 1 RT 1: 27707-31245 bp Neighborhood of RT #1 [27707, 31245] RVT-UG17 SLATT_5 Feature: gene Location: 27707-28132 bp Feature: gene Location: 28149-28619 bp Feature: gene Location: 28661-30025 bp Ori: KSK60093.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28889-29492 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 28889-29492 bp Feature: gene Location: 30022-30564 bp Ori: OPE08044.1 Feature: domain Description: SLATT_5 Location: 30028-30538 bp Feature: domain Description: SLATT_5 Location: 30028-30538 bp Feature: gene Location: 30925-31245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160)

Seq: LLQL01000073.1 Pseudomonas aeruginosa strain WH-SGI-V-07505 WH-SGI-V-07505_contig8, whole genome shotgun sequence (404331 bp)
Overview 1 RT 1: 291975-302281 bp Neighborhood of RT #1 [291975, 302283] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 291975-293096 bp Ori: KSK50378.1 Feature: domain Description: COG3177 Location: 291993-293085 bp Feature: domain Description: COG3177 Location: 2 91993-2 93085 bp Feature: gene Location: 293355-293492 bp Feature: gene Location: 293820-295505 bp Ori: KSK50380.1 Feature: domain Description: RVT_N Location: 293877-294117 bp Feature: domain Description: RVT_N Location: 2 93877-2 94117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294165-294801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 94165-2 94801 bp Feature: domain Description: GIIM Note: maturase Location: 294855-295086 bp Feature: domain Description: GIIM Note: maturase Location: 2 94855-2 95086 bp Feature: domain Description: HNH Note: nucleases Location: 295338-295476 bp Feature: domain Description: HNH Note: nucleases Location: 2 95338-2 95476 bp Feature: gene Location: 296586-300323 bp Ori: KSK50381.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 296694-297351 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 96694-2 97351 bp Feature: domain Description: PRK09776 Location: 297564-298035 bp Feature: domain Description: PRK09776 Location: 2 97564-2 98035 bp Feature: domain Description: PAS Location: 298125-298617 bp Feature: domain Description: PAS Location: 2 9812 5-2 98617 bp Feature: domain Description: PRK10060 Location: 298626-300273 bp Feature: domain Description: PRK10060 Location: 2 9862 6-3002 73 bp Feature: gene Location: 300430-302283 bp Ori: KSK50382.1 Feature: domain Description: PRK05658 Location: 300442-302281 bp Feature: domain Description: PRK05658 Location: 300442 -302 2 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: LLQL01000004.1 Pseudomonas aeruginosa strain WH-SGI-V-07505 WH-SGI-V-07505_contig12, whole genome shotgun sequence (241071 bp)
Overview 1 RT 1: 2-5573 bp Neighborhood of RT #1 [2, 5770] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 2-443 bp Feature: domain Description: DUF772 Location: 83-278 bp Feature: domain Description: DUF772 Location: 83 -278 bp Feature: gene Location: 963-2231 bp Ori: KSK64820.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-183 3 bp Feature: domain Description: GIIM Note: maturase Location: 1911-2133 bp Feature: domain Description: GIIM Note: maturase Location: 1911-213 3 bp Feature: gene Location: 2381-2707 bp Feature: gene Location: 4226-5770 bp Ori: KSK64821.1 Feature: domain Description: CHD Location: 4442-4856 bp Feature: domain Description: CHD Location: 4442-4856 bp Feature: domain Description: CHD Location: 5084-5573 bp Feature: domain Description: CHD Location: 5084-5573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)