myRT

myRT report for GCA_001451945.1_WH-SGI-V-07618

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Seq: LLQP01000072.1 Pseudomonas aeruginosa strain WH-SGI-V-07618 WH-SGI-V-07618_contig2, whole genome shotgun sequence (705716 bp)
Overview 1 RT 1: 102091-110270 bp 2 RT 2: 126531-136818 bp Neighborhood of RT #1 [102091, 110278] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [126531, 136829] PRK05658 PBP2_BvgS_HisK_like PRK09776 sensory_box PAS_9 PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 102091-103107 bp Feature: domain Description: COG3178 Location: 102094-103093 bp Feature: domain Description: COG31 78 Location: 1 02094-1 03093 bp Feature: gene Location: 103980-104192 bp Feature: gene Location: 104380-106092 bp Feature: RT Description: RVT_N Location: 104437-104680 bp Feature: RT Description: RVT_N Location: 1 04437-1 04680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104725-105361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04725-1 05361 bp Feature: domain Description: YkfC Location: 105568-105721 bp Feature: domain Description: YkfC Location: 1 05568-1 05721 bp Feature: domain Description: HNH Note: nucleases Location: 105898-106036 bp Feature: domain Description: HNH Note: nucleases Location: 1 05898-1 06036 bp Feature: gene Location: 106225-109005 bp Feature: domain Description: LptD Location: 106570-108991 bp Feature: domain Description: LptD Location: 1 06570-1 08991 bp Feature: gene Location: 108986-110278 bp Feature: domain Description: PRK10770 Location: 109076-110270 bp Feature: domain Description: PRK1 0770 Location: 1 09076-1 1 0270 bp Feature: gene Location: 126531-128384 bp Feature: domain Description: PRK05658 Location: 126543-128382 bp Feature: domain Description: PRK05658 Location: 1 26543-1 28382 bp Feature: gene Location: 128491-132228 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 128599-129256 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 28599-1 29256 bp Feature: domain Description: PRK09776 Location: 129469-129790 bp Feature: domain Description: PRK09776 Location: 1 29469-1 29790 bp Feature: domain Description: sensory_box Location: 129799-130159 bp Feature: domain Description: sensory_box Location: 1 29799-1 301 59 bp Feature: domain Description: PAS_9 Location: 130207-130513 bp Feature: domain Description: PAS_9 Location: 1 30207-1 3051 3 bp Feature: domain Description: PRK10060 Location: 130531-132178 bp Feature: domain Description: PRK1 0060 Location: 1 30531 -1 321 78 bp Feature: gene Location: 133309-134994 bp Feature: RT Description: RVT_N Location: 133366-133606 bp Feature: RT Description: RVT_N Location: 1 33366-1 33606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133654-134290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 33654-1 34290 bp Feature: domain Description: GIIM Note: maturase Location: 134344-134575 bp Feature: domain Description: GIIM Note: maturase Location: 1 34344-1 34575 bp Feature: domain Description: HNH Note: nucleases Location: 134827-134965 bp Feature: domain Description: HNH Note: nucleases Location: 1 34827-1 34965 bp Feature: gene Location: 135297-135446 bp Feature: gene Location: 135708-136829 bp Feature: domain Description: COG3177 Location: 135726-136818 bp Feature: domain Description: COG31 77 Location: 1 35726-1 3681 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
sensory_box (TIGR00229), PAS_9 (pfam13426), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )