myRT

myRT report for GCA_001451965.1_WH-SGI-V-07619

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Seq: LLQQ01000099.1 Pseudomonas aeruginosa strain WH-SGI-V-07619 WH-SGI-V-07619_contig6, whole genome shotgun sequence (252262 bp)
Overview 1 RT 1: 81597-87735 bp Neighborhood of RT #1 [81597, 87740] PRK14196 COG4318 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 81597-81980 bp Feature: domain Description: PRK14196 Location: 81600-81972 bp Feature: domain Description: PRK1 41 96 Location: 81 600-81 972 bp Feature: gene Location: 82210-82896 bp Feature: domain Description: COG4318 Location: 82228-82891 bp Feature: domain Description: COG431 8 Location: 82228-82891 bp Feature: gene Location: 83027-84718 bp Feature: RT Description: RVT_N Location: 83081-83321 bp Feature: RT Description: RVT_N Location: 83081 -83321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83369-84014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83369-8401 4 bp Feature: domain Description: GIIM Note: maturase Location: 84065-84299 bp Feature: domain Description: GIIM Note: maturase Location: 84065-84299 bp Feature: domain Description: HNHc Note: nucleases Location: 84518-84671 bp Feature: domain Description: HNHc Note: nucleases Location: 8451 8-84671 bp Feature: gene Location: 85753-87396 bp Feature: domain Description: groEL Location: 85759-87376 bp Feature: domain Description: groEL Location: 85759-87376 bp Feature: gene Location: 87447-87740 bp Feature: domain Description: groES Location: 87450-87735 bp Feature: domain Description: groES Location: 87450-87735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14196 (fluoride efflux transporter CrcB), COG4318 (Uncharacterized protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: LLQQ01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07619 WH-SGI-V-07619_contig11, whole genome shotgun sequence (187682 bp)
Overview 1 RT 1: 90408-100716 bp 2 RT 2: 116975-125168 bp Neighborhood of RT #1 [90408, 100718] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [116975, 125182] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 90408-91529 bp Feature: domain Description: COG3177 Location: 90426-91518 bp Feature: domain Description: COG3177 Location: 9042 6-91518 bp Feature: gene Location: 91791-91952 bp Feature: gene Location: 92255-93940 bp Feature: RT Description: RVT_N Location: 92312-92552 bp Feature: RT Description: RVT_N Location: 92 312 -92 552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92600-93236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 600-932 36 bp Feature: domain Description: GIIM Note: maturase Location: 93290-93521 bp Feature: domain Description: GIIM Note: maturase Location: 932 90-9352 1 bp Feature: domain Description: HNH Note: nucleases Location: 93773-93911 bp Feature: domain Description: HNH Note: nucleases Location: 93773-93911 bp Feature: gene Location: 95021-98758 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 95129-95786 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 9512 9-95786 bp Feature: domain Description: PRK09776 Location: 95999-96470 bp Feature: domain Description: PRK09776 Location: 95999-96470 bp Feature: domain Description: PAS Location: 96527-97052 bp Feature: domain Description: PAS Location: 9652 7-97052 bp Feature: domain Description: PRK10060 Location: 97061-98708 bp Feature: domain Description: PRK10060 Location: 97061-98708 bp Feature: gene Location: 98865-100718 bp Feature: domain Description: PRK05658 Location: 98877-100716 bp Feature: domain Description: PRK05658 Location: 98877-100716 bp Feature: gene Location: 116975-118267 bp Feature: domain Description: PRK10770 Location: 117065-118259 bp Feature: domain Description: PRK10770 Location: 117065-1182 59 bp Feature: gene Location: 118248-121049 bp Feature: domain Description: LptD Location: 118443-121035 bp Feature: domain Description: LptD Location: 118443-12 1035 bp Feature: gene Location: 121182-122894 bp Feature: RT Description: RVT_N Location: 121239-121482 bp Feature: RT Description: RVT_N Location: 12 12 39-12 1482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121527-122160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 152 7-12 2 160 bp Feature: domain Description: YkfC Location: 122373-122523 bp Feature: domain Description: YkfC Location: 12 2 373-12 2 52 3 bp Feature: domain Description: HNH Note: nucleases Location: 122700-122838 bp Feature: domain Description: HNH Note: nucleases Location: 12 2 700-12 2 838 bp Feature: gene Location: 123081-123293 bp Feature: gene Location: 124166-125182 bp Feature: domain Description: COG3178 Location: 124169-125168 bp Feature: domain Description: COG3178 Location: 12 4169-12 5168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )