myRT

myRT report for GCA_001451975.1_WH-SGI-V-07621

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Seq: LLQS01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07621 WH-SGI-V-07621_contig3, whole genome shotgun sequence (526041 bp)
Overview 1 RT 1: 441039-451345 bp 2 RT 2: 467603-475785 bp Neighborhood of RT #1 [441039, 451347] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [467603, 475799] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 441039-442160 bp Feature: domain Description: COG3177 Location: 441057-442149 bp Feature: domain Description: COG31 77 Location: 441 057-4421 49 bp Feature: gene Location: 442419-442556 bp Feature: gene Location: 442884-444569 bp Feature: RT Description: RVT_N Location: 442941-443181 bp Feature: RT Description: RVT_N Location: 442941 -4431 81 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443229-443865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443229-443865 bp Feature: domain Description: GIIM Note: maturase Location: 443919-444150 bp Feature: domain Description: GIIM Note: maturase Location: 44391 9-4441 50 bp Feature: domain Description: HNH Note: nucleases Location: 444402-444540 bp Feature: domain Description: HNH Note: nucleases Location: 444402-444540 bp Feature: gene Location: 445650-449387 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 445758-446415 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 445758-44641 5 bp Feature: domain Description: PRK09776 Location: 446628-447099 bp Feature: domain Description: PRK09776 Location: 446628-447099 bp Feature: domain Description: PAS Location: 447156-447681 bp Feature: domain Description: PAS Location: 4471 56-447681 bp Feature: domain Description: PRK10060 Location: 447690-449337 bp Feature: domain Description: PRK1 0060 Location: 447690-449337 bp Feature: gene Location: 449494-451347 bp Feature: domain Description: PRK05658 Location: 449506-451345 bp Feature: domain Description: PRK05658 Location: 449506-451 345 bp Feature: gene Location: 467603-468895 bp Feature: domain Description: PRK10770 Location: 467693-468887 bp Feature: domain Description: PRK1 0770 Location: 467693-468887 bp Feature: gene Location: 468876-471665 bp Feature: domain Description: LptD Location: 469071-471651 bp Feature: domain Description: LptD Location: 469071 -471 651 bp Feature: gene Location: 471798-473510 bp Feature: RT Description: RVT_N Location: 471855-472098 bp Feature: RT Description: RVT_N Location: 471 855-472098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472143-472779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4721 43-472779 bp Feature: domain Description: YkfC Location: 472986-473139 bp Feature: domain Description: YkfC Location: 472986-4731 39 bp Feature: domain Description: HNH Note: nucleases Location: 473316-473454 bp Feature: domain Description: HNH Note: nucleases Location: 47331 6-473454 bp Feature: gene Location: 473698-473910 bp Feature: gene Location: 474783-475799 bp Feature: domain Description: COG3178 Location: 474786-475785 bp Feature: domain Description: COG31 78 Location: 474786-475785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )