myRT

myRT report for GCA_001451985.1_WH-SGI-V-07622

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Seq: LLQT01000079.1 Pseudomonas aeruginosa strain WH-SGI-V-07622 WH-SGI-V-07622_contig2, whole genome shotgun sequence (409050 bp)
Overview 1 RT 1: 326963-337269 bp Neighborhood of RT #1 [326963, 337271] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 326963-328084 bp Feature: domain Description: COG3177 Location: 326981-328073 bp Feature: domain Description: COG31 77 Location: 326981 -328073 bp Feature: gene Location: 328343-328479 bp Feature: gene Location: 328808-330493 bp Feature: RT Description: RVT_N Location: 328865-329105 bp Feature: RT Description: RVT_N Location: 328865-3291 05 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329153-329789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3291 53-329789 bp Feature: domain Description: GIIM Note: maturase Location: 329843-330074 bp Feature: domain Description: GIIM Note: maturase Location: 329843-330074 bp Feature: domain Description: HNH Note: nucleases Location: 330326-330464 bp Feature: domain Description: HNH Note: nucleases Location: 330326-330464 bp Feature: gene Location: 331574-335311 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 331682-332339 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 331 682-332339 bp Feature: domain Description: PRK09776 Location: 332552-333023 bp Feature: domain Description: PRK09776 Location: 332552-333023 bp Feature: domain Description: PAS Location: 333083-333605 bp Feature: domain Description: PAS Location: 333083-333605 bp Feature: domain Description: PRK10060 Location: 333614-335261 bp Feature: domain Description: PRK1 0060 Location: 33361 4-335261 bp Feature: gene Location: 335418-337271 bp Feature: domain Description: PRK05658 Location: 335430-337269 bp Feature: domain Description: PRK05658 Location: 335430-337269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)