myRT

myRT report for GCA_001452155.1_WH-SGI-V-07636

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Seq: LLRH01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07636 WH-SGI-V-07636_contig3, whole genome shotgun sequence (592810 bp)
Overview 1 RT 1: 111928-117238 bp Neighborhood of RT #1 [111928, 117345] DEXHc_Snf RVT_N RVT-GII YkfC HNHc conj_PilL Feature: gene Location: 111928-112827 bp Feature: domain Description: DEXHc_Snf Location: 112147-112402 bp Feature: domain Description: DEXHc_Snf Location: 1 1 21 47-1 1 2402 bp Feature: gene Location: 113174-113451 bp Feature: gene Location: 113448-115145 bp Feature: RT Description: RVT_N Location: 113502-113745 bp Feature: RT Description: RVT_N Location: 1 1 3502-1 1 3745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113790-114432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 3790-1 1 4432 bp Feature: domain Description: YkfC Location: 114432-114741 bp Feature: domain Description: YkfC Location: 1 1 4432-1 1 4741 bp Feature: domain Description: HNHc Note: nucleases Location: 114936-115098 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 4936-1 1 5098 bp Feature: gene Location: 115112-116607 bp Feature: gene Location: 116746-117345 bp Feature: domain Description: conj_PilL Location: 116929-117238 bp Feature: domain Description: conj_PilL Location: 1 1 6929-1 1 7238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), conj_PilL (TIGR03748)

Seq: LLRH01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07636 WH-SGI-V-07636_contig2, whole genome shotgun sequence (641603 bp)
Overview 1 RT 1: 1541-9732 bp 2 RT 2: 25996-36295 bp Neighborhood of RT #1 [1541, 9740] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [25996, 36306] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 1541-2557 bp Feature: domain Description: COG3178 Location: 1544-2543 bp Feature: domain Description: COG3178 Location: 1544-2 543 bp Feature: gene Location: 3430-3642 bp Feature: gene Location: 3830-5542 bp Feature: RT Description: RVT_N Location: 3887-4130 bp Feature: RT Description: RVT_N Location: 3887-4130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175-4811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175-4811 bp Feature: domain Description: YkfC Location: 5018-5171 bp Feature: domain Description: YkfC Location: 5018-5171 bp Feature: domain Description: HNH Note: nucleases Location: 5348-5486 bp Feature: domain Description: HNH Note: nucleases Location: 5348-5486 bp Feature: gene Location: 5675-8467 bp Feature: domain Description: LptD Location: 5870-8453 bp Feature: domain Description: LptD Location: 5870-8453 bp Feature: gene Location: 8448-9740 bp Feature: domain Description: PRK10770 Location: 8538-9732 bp Feature: domain Description: PRK10770 Location: 8538-9732 bp Feature: gene Location: 25996-27849 bp Feature: domain Description: PRK05658 Location: 26008-27847 bp Feature: domain Description: PRK05658 Location: 2 6008-2 7847 bp Feature: gene Location: 27956-31693 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 28064-28721 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 8064-2 872 1 bp Feature: domain Description: PRK09776 Location: 28934-29405 bp Feature: domain Description: PRK09776 Location: 2 8934-2 9405 bp Feature: domain Description: PAS Location: 29456-29987 bp Feature: domain Description: PAS Location: 2 9456-2 9987 bp Feature: domain Description: PRK10060 Location: 29996-31643 bp Feature: domain Description: PRK10060 Location: 2 9996-31643 bp Feature: gene Location: 32774-34459 bp Feature: RT Description: RVT_N Location: 32831-33071 bp Feature: RT Description: RVT_N Location: 32 831-33071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33119-33755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33119-33755 bp Feature: domain Description: GIIM Note: maturase Location: 33809-34040 bp Feature: domain Description: GIIM Note: maturase Location: 33809-34040 bp Feature: domain Description: HNH Note: nucleases Location: 34292-34430 bp Feature: domain Description: HNH Note: nucleases Location: 342 92 -34430 bp Feature: gene Location: 34762-34923 bp Feature: gene Location: 35185-36306 bp Feature: domain Description: COG3177 Location: 35203-36295 bp Feature: domain Description: COG3177 Location: 352 03-362 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )