myRT

myRT report for GCA_001452205.1_WH-SGI-V-07640

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Seq: LLRL01000097.1 Pseudomonas aeruginosa strain WH-SGI-V-07640 WH-SGI-V-07640_contig3, whole genome shotgun sequence (469932 bp)
Overview 1 RT 1: 64313-72485 bp 2 RT 2: 88749-99046 bp Neighborhood of RT #1 [64313, 72493] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88749, 99057] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 64313-65329 bp Feature: domain Description: COG3178 Location: 64316-65315 bp Feature: domain Description: COG31 78 Location: 6431 6-6531 5 bp Feature: gene Location: 66202-66414 bp Feature: gene Location: 66601-68313 bp Feature: RT Description: RVT_N Location: 66658-66901 bp Feature: RT Description: RVT_N Location: 66658-66901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66946-67579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66946-67579 bp Feature: domain Description: YkfC Location: 67792-67942 bp Feature: domain Description: YkfC Location: 67792-67942 bp Feature: domain Description: HNH Note: nucleases Location: 68119-68257 bp Feature: domain Description: HNH Note: nucleases Location: 681 1 9-68257 bp Feature: gene Location: 68446-71220 bp Feature: domain Description: LptD Location: 68641-71206 bp Feature: domain Description: LptD Location: 68641 -71 206 bp Feature: gene Location: 71201-72493 bp Feature: domain Description: PRK10770 Location: 71291-72485 bp Feature: domain Description: PRK1 0770 Location: 71 291 -72485 bp Feature: gene Location: 88749-90602 bp Feature: domain Description: PRK05658 Location: 88761-90600 bp Feature: domain Description: PRK05658 Location: 88761 -90600 bp Feature: gene Location: 90709-94446 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90817-91474 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 9081 7-91 474 bp Feature: domain Description: PRK09776 Location: 91687-92158 bp Feature: domain Description: PRK09776 Location: 91 687-921 58 bp Feature: domain Description: PAS Location: 92218-92740 bp Feature: domain Description: PAS Location: 9221 8-92740 bp Feature: domain Description: PRK10060 Location: 92752-94396 bp Feature: domain Description: PRK1 0060 Location: 92752-94396 bp Feature: gene Location: 95527-97212 bp Feature: RT Description: RVT_N Location: 95584-95824 bp Feature: RT Description: RVT_N Location: 95584-95824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95872-96508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95872-96508 bp Feature: domain Description: GIIM Note: maturase Location: 96562-96793 bp Feature: domain Description: GIIM Note: maturase Location: 96562-96793 bp Feature: domain Description: HNH Note: nucleases Location: 97045-97183 bp Feature: domain Description: HNH Note: nucleases Location: 97045-971 83 bp Feature: gene Location: 97540-97677 bp Feature: gene Location: 97936-99057 bp Feature: domain Description: COG3177 Location: 97954-99046 bp Feature: domain Description: COG31 77 Location: 97954-99046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )