myRT

myRT report for GCA_001452215.1_WH-SGI-V-07641

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Seq: LLRM01000068.1 Pseudomonas aeruginosa strain WH-SGI-V-07641 WH-SGI-V-07641_contig24, whole genome shotgun sequence (95306 bp)
Overview 1 RT 1: 1088-11393 bp Neighborhood of RT #1 [1088, 11395] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 1088-2209 bp Feature: domain Description: COG3177 Location: 1106-2198 bp Feature: domain Description: COG31 77 Location: 1 1 06-21 98 bp Feature: gene Location: 2468-2604 bp Feature: gene Location: 2932-4617 bp Feature: RT Description: RVT_N Location: 2989-3229 bp Feature: RT Description: RVT_N Location: 2989-3229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3277-3913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3277-391 3 bp Feature: domain Description: GIIM Note: maturase Location: 3967-4198 bp Feature: domain Description: GIIM Note: maturase Location: 3967-41 98 bp Feature: domain Description: HNH Note: nucleases Location: 4450-4588 bp Feature: domain Description: HNH Note: nucleases Location: 4450-4588 bp Feature: gene Location: 5698-9435 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5806-6463 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5806-6463 bp Feature: domain Description: PRK09776 Location: 6676-7147 bp Feature: domain Description: PRK09776 Location: 6676-71 47 bp Feature: domain Description: PAS Location: 7192-7729 bp Feature: domain Description: PAS Location: 71 92-7729 bp Feature: domain Description: PRK10060 Location: 7738-9385 bp Feature: domain Description: PRK1 0060 Location: 7738-9385 bp Feature: gene Location: 9542-11395 bp Feature: domain Description: PRK05658 Location: 9554-11393 bp Feature: domain Description: PRK05658 Location: 9554-1 1 393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)