myRT

myRT report for GCA_001452365.1_WH-SGI-V-07651

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Seq: LLRW01000002.1 Pseudomonas aeruginosa strain WH-SGI-V-07651 WH-SGI-V-07651_contig10, whole genome shotgun sequence (260198 bp)
Overview 1 RT 1: 254429-260198 bp Neighborhood of RT #1 [254429, 260198] CHD CHD RVT-GII GIIM Feature: gene Location: 254429-255973 bp Ori: KSN42585.1 Feature: domain Description: CHD Location: 254645-255059 bp Feature: domain Description: CHD Location: 254645-255059 bp Feature: domain Description: CHD Location: 255287-255776 bp Feature: domain Description: CHD Location: 255287-255776 bp Feature: gene Location: 257492-257818 bp Feature: gene Location: 257968-259236 bp Ori: KSN42586.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258181-258838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2581 81 -258838 bp Feature: domain Description: GIIM Note: maturase Location: 258916-259138 bp Feature: domain Description: GIIM Note: maturase Location: 25891 6-2591 38 bp Feature: gene Location: 259756-260198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLRW01000041.1 Pseudomonas aeruginosa strain WH-SGI-V-07651 WH-SGI-V-07651_contig14, whole genome shotgun sequence (185126 bp)
Overview 1 RT 1: 87181-91933 bp Neighborhood of RT #1 [87181, 91933] YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 87181-88125 bp Ori: KSN38061.1 Feature: domain Description: YgfZ Location: 87190-88090 bp Feature: domain Description: YgfZ Location: 87190-88090 bp Feature: gene Location: 89082-89359 bp Feature: gene Location: 89446-91167 bp Ori: KSN38062.1 Feature: domain Description: RVT_N Location: 89503-89740 bp Feature: domain Description: RVT_N Location: 89503-89740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89791-90427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89791-9042 7 bp Feature: domain Description: YkfC Location: 90625-90781 bp Feature: domain Description: YkfC Location: 9062 5-90781 bp Feature: domain Description: HNH Note: nucleases Location: 90964-91102 bp Feature: domain Description: HNH Note: nucleases Location: 90964-91102 bp Feature: gene Location: 91243-91497 bp Ori: KSN38063.1 Feature: domain Description: SdhE Location: 91249-91489 bp Feature: domain Description: SdhE Location: 912 49-91489 bp Feature: gene Location: 91481-91933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: LLRW01000066.1 Pseudomonas aeruginosa strain WH-SGI-V-07651 WH-SGI-V-07651_contig37, whole genome shotgun sequence (36346 bp)
Overview 1 RT 1: 1987-9298 bp Neighborhood of RT #1 [1987, 10353] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1987-3126 bp Ori: KSN32750.1 Feature: domain Description: AAA_21 Location: 2059-2128 bp Feature: domain Description: AAA_21 Location: 2059-2128 bp Feature: domain Description: AAA_21 Location: 2602-2932 bp Feature: domain Description: AAA_21 Location: 2602-293 2 bp Feature: gene Location: 3126-3683 bp Feature: gene Location: 4202-6700 bp Ori: KSN32752.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4205-4646 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4205-4646 bp Feature: gene Location: 7738-8478 bp Ori: KSN32765.2 Feature: domain Description: YeeA Location: 7753-8344 bp Feature: domain Description: YeeA Location: 7753 -83 44 bp Feature: gene Location: 8482-10353 bp Ori: KSN32753.1 Feature: domain Description: DUF262 Location: 8530-9298 bp Feature: domain Description: DUF262 Location: 853 0-9298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: LLRW01000069.1 Pseudomonas aeruginosa strain WH-SGI-V-07651 WH-SGI-V-07651_contig4, whole genome shotgun sequence (377718 bp)
Overview 1 RT 1: 292803-303108 bp 2 RT 2: 319366-327530 bp Neighborhood of RT #1 [292803, 303110] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [319366, 327544] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 292803-293924 bp Ori: KSN32618.1 Feature: domain Description: COG3177 Location: 292821-293913 bp Feature: domain Description: COG3177 Location: 292821-293913 bp Feature: gene Location: 294183-294319 bp Feature: gene Location: 294647-296332 bp Ori: KSN32619.1 Feature: domain Description: RVT_N Location: 294704-294944 bp Feature: domain Description: RVT_N Location: 294 704 -294 94 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294992-295628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294 992-295628 bp Feature: domain Description: GIIM Note: maturase Location: 295682-295913 bp Feature: domain Description: GIIM Note: maturase Location: 295682-295913 bp Feature: domain Description: HNH Note: nucleases Location: 296165-296303 bp Feature: domain Description: HNH Note: nucleases Location: 296165-296303 bp Feature: gene Location: 297413-301150 bp Ori: KSN32620.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 297521-298178 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297521-298178 bp Feature: domain Description: PRK09776 Location: 298391-298862 bp Feature: domain Description: PRK09776 Location: 298391-298862 bp Feature: domain Description: PAS Location: 298919-299444 bp Feature: domain Description: PAS Location: 298919-2994 4 4 bp Feature: domain Description: PRK10060 Location: 299456-301100 bp Feature: domain Description: PRK10060 Location: 2994 56-301100 bp Feature: gene Location: 301257-303110 bp Ori: KSN32621.1 Feature: domain Description: PRK05658 Location: 301269-303108 bp Feature: domain Description: PRK05658 Location: 301269-303108 bp Feature: gene Location: 319366-320658 bp Ori: KSN32639.1 Feature: domain Description: PRK10770 Location: 319456-320650 bp Feature: domain Description: PRK10770 Location: 3194 56-320650 bp Feature: gene Location: 320639-323410 bp Ori: KSN32640.1 Feature: domain Description: LptD Location: 320834-323396 bp Feature: domain Description: LptD Location: 320834 -323396 bp Feature: gene Location: 323543-325255 bp Ori: KSN32641.1 Feature: domain Description: RVT_N Location: 323600-323843 bp Feature: domain Description: RVT_N Location: 323600-32384 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323888-324524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323888-324 524 bp Feature: domain Description: YkfC Location: 324734-324884 bp Feature: domain Description: YkfC Location: 324 734 -324 884 bp Feature: domain Description: HNH Note: nucleases Location: 325061-325199 bp Feature: domain Description: HNH Note: nucleases Location: 325061-325199 bp Feature: gene Location: 325443-325655 bp Feature: gene Location: 326528-327544 bp Ori: KSN32642.1 Feature: domain Description: COG3178 Location: 326531-327530 bp Feature: domain Description: COG3178 Location: 326531-327530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )