myRT

myRT report for GCA_001452405.1_WH-SGI-V-07680

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Seq: LLSA01000078.1 Pseudomonas aeruginosa strain WH-SGI-V-07680 WH-SGI-V-07680_contig8, whole genome shotgun sequence (272548 bp)
Overview 1 RT 1: 117366-124481 bp Neighborhood of RT #1 [117366, 124492] clpP tig RVT_N RVT-GII GIIM HNH OmpR PRK10604 Feature: gene Location: 117366-118007 bp Feature: domain Description: clpP Location: 117420-117996 bp Feature: domain Description: clpP Location: 1 1 7420-1 1 7996 bp Feature: gene Location: 118101-119411 bp Feature: domain Description: tig Location: 118104-119382 bp Feature: domain Description: tig Location: 1 1 81 04-1 1 9382 bp Feature: gene Location: 119541-121244 bp Feature: RT Description: RVT_N Location: 119598-119841 bp Feature: RT Description: RVT_N Location: 1 1 9598-1 1 9841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119886-120522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9886-1 20522 bp Feature: domain Description: GIIM Note: maturase Location: 120573-120807 bp Feature: domain Description: GIIM Note: maturase Location: 1 20573-1 20807 bp Feature: domain Description: HNH Note: nucleases Location: 121059-121197 bp Feature: domain Description: HNH Note: nucleases Location: 1 21 059-1 21 1 97 bp Feature: gene Location: 122498-123205 bp Feature: domain Description: OmpR Location: 122522-123188 bp Feature: domain Description: OmpR Location: 1 22522-1 231 88 bp Feature: gene Location: 123206-124492 bp Feature: domain Description: PRK10604 Location: 123209-124481 bp Feature: domain Description: PRK1 0604 Location: 1 23209-1 24481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OmpR (COG0745), PRK10604 (sensor protein RstB; Provisional)

Seq: LLSA01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07680 WH-SGI-V-07680_contig3, whole genome shotgun sequence (434694 bp)
Overview 1 RT 1: 295387-305695 bp 2 RT 2: 321954-330147 bp Neighborhood of RT #1 [295387, 305697] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [321954, 330161] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 295387-296508 bp Feature: domain Description: COG3177 Location: 295405-296497 bp Feature: domain Description: COG3177 Location: 2 95405-2 96497 bp Feature: gene Location: 296770-296931 bp Feature: gene Location: 297234-298919 bp Feature: RT Description: RVT_N Location: 297291-297531 bp Feature: RT Description: RVT_N Location: 2 972 91-2 97531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297579-298215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 97579-2 982 15 bp Feature: domain Description: GIIM Note: maturase Location: 298269-298500 bp Feature: domain Description: GIIM Note: maturase Location: 2 982 69-2 98500 bp Feature: domain Description: HNH Note: nucleases Location: 298752-298890 bp Feature: domain Description: HNH Note: nucleases Location: 2 98752 -2 98890 bp Feature: gene Location: 300000-303737 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 300108-300765 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 300108-300765 bp Feature: domain Description: PRK09776 Location: 300978-301449 bp Feature: domain Description: PRK09776 Location: 300978-301449 bp Feature: domain Description: PAS Location: 301506-302031 bp Feature: domain Description: PAS Location: 301506-302 031 bp Feature: domain Description: PRK10060 Location: 302040-303687 bp Feature: domain Description: PRK10060 Location: 302 040-303687 bp Feature: gene Location: 303844-305697 bp Feature: domain Description: PRK05658 Location: 303856-305695 bp Feature: domain Description: PRK05658 Location: 303856-305695 bp Feature: gene Location: 321954-323246 bp Feature: domain Description: PRK10770 Location: 322044-323238 bp Feature: domain Description: PRK10770 Location: 32 2 044-32 32 38 bp Feature: gene Location: 323227-326028 bp Feature: domain Description: LptD Location: 323422-326014 bp Feature: domain Description: LptD Location: 32 342 2 -32 6014 bp Feature: gene Location: 326161-327873 bp Feature: RT Description: RVT_N Location: 326218-326461 bp Feature: RT Description: RVT_N Location: 32 62 18-32 6461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326506-327139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 6506-32 7139 bp Feature: domain Description: YkfC Location: 327352-327502 bp Feature: domain Description: YkfC Location: 32 7352 -32 7502 bp Feature: domain Description: HNH Note: nucleases Location: 327679-327817 bp Feature: domain Description: HNH Note: nucleases Location: 32 7679-32 7817 bp Feature: gene Location: 328060-328272 bp Feature: gene Location: 329145-330161 bp Feature: domain Description: COG3178 Location: 329148-330147 bp Feature: domain Description: COG3178 Location: 32 9148-330147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )