myRT

myRT report for GCA_001452485.1_WH-SGI-V-07688

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Seq: LLSI01000058.1 Pseudomonas aeruginosa strain WH-SGI-V-07688 WH-SGI-V-07688_contig4, whole genome shotgun sequence (470591 bp)
Overview 1 RT 1: 50175-58345 bp 2 RT 2: 74609-84905 bp Neighborhood of RT #1 [50175, 58353] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74609, 84916] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50175-51191 bp Ori: KSN57741.1 Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: domain Description: COG31 78 Location: 501 78-51 1 77 bp Feature: gene Location: 52064-52276 bp Feature: gene Location: 52464-54176 bp Ori: KSN57742.1 Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: domain Description: RVT_N Location: 52521 -52764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: HNH Note: nucleases Location: 53982-54120 bp Feature: domain Description: HNH Note: nucleases Location: 53982-541 20 bp Feature: gene Location: 54309-57080 bp Ori: KSN57743.1 Feature: domain Description: LptD Location: 54504-57066 bp Feature: domain Description: LptD Location: 54504-57066 bp Feature: gene Location: 57061-58353 bp Ori: KSN57744.1 Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: domain Description: PRK1 0770 Location: 571 51 -58345 bp Feature: gene Location: 74609-76462 bp Ori: KSN57762.1 Feature: domain Description: PRK05658 Location: 74621-76460 bp Feature: domain Description: PRK05658 Location: 74621 -76460 bp Feature: gene Location: 76569-80306 bp Ori: KSN57763.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PRK09776 Location: 77547-7801 8 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: domain Description: PRK1 0060 Location: 7861 2-80256 bp Feature: gene Location: 81387-83072 bp Ori: KSN57764.1 Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: domain Description: RVT_N Location: 81 444-81 684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 732-82368 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: gene Location: 83400-83536 bp Feature: gene Location: 83795-84916 bp Ori: KSN57765.1 Feature: domain Description: COG3177 Location: 83813-84905 bp Feature: domain Description: COG31 77 Location: 8381 3-84905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: LLSI01000031.1 Pseudomonas aeruginosa strain WH-SGI-V-07688 WH-SGI-V-07688_contig15, whole genome shotgun sequence (202989 bp)
Overview 1 RT 1: 197220-202989 bp Neighborhood of RT #1 [197220, 202989] CHD CHD RVT-GII GIIM Feature: gene Location: 197220-198764 bp Ori: KSN64474.1 Feature: domain Description: CHD Location: 197436-197850 bp Feature: domain Description: CHD Location: 197436-197850 bp Feature: domain Description: CHD Location: 198078-198567 bp Feature: domain Description: CHD Location: 198078-198567 bp Feature: gene Location: 200283-200609 bp Feature: gene Location: 200759-202027 bp Ori: KSN64475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200972-201629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 00972 -2 0162 9 bp Feature: domain Description: GIIM Note: maturase Location: 201707-201929 bp Feature: domain Description: GIIM Note: maturase Location: 2 01707-2 0192 9 bp Feature: gene Location: 202547-202989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLSI01000113.1 Pseudomonas aeruginosa strain WH-SGI-V-07688 WH-SGI-V-07688_contig9, whole genome shotgun sequence (259218 bp)
Overview 1 RT 1: 93194-97911 bp Neighborhood of RT #1 [93194, 97946] SdhE RVT_N RVT-GII YkfC HNH YgfZ Feature: gene Location: 93194-93646 bp Feature: gene Location: 93630-93884 bp Ori: KSN52121.1 Feature: domain Description: SdhE Location: 93636-93876 bp Feature: domain Description: SdhE Location: 93 63 6-93 876 bp Feature: gene Location: 93960-95681 bp Ori: KSN52122.1 Feature: domain Description: RVT_N Location: 94017-94254 bp Feature: domain Description: RVT_N Location: 94017-94254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94305-94941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943 05-94941 bp Feature: domain Description: YkfC Location: 95139-95295 bp Feature: domain Description: YkfC Location: 9513 9-95295 bp Feature: domain Description: HNH Note: nucleases Location: 95478-95616 bp Feature: domain Description: HNH Note: nucleases Location: 95478-95616 bp Feature: gene Location: 95768-96045 bp Feature: gene Location: 97002-97946 bp Ori: KSN52123.1 Feature: domain Description: YgfZ Location: 97011-97911 bp Feature: domain Description: YgfZ Location: 97011-97911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354)

Seq: LLSI01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07688 WH-SGI-V-07688_contig1, whole genome shotgun sequence (694362 bp)
Overview 1 RT 1: 660003-667314 bp Neighborhood of RT #1 [660003, 668369] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 660003-661142 bp Ori: KSN68226.1 Feature: domain Description: AAA_21 Location: 660075-660144 bp Feature: domain Description: AAA_21 Location: 660075-66014 4 bp Feature: domain Description: AAA_21 Location: 660618-660948 bp Feature: domain Description: AAA_21 Location: 660618-66094 8 bp Feature: gene Location: 661142-661699 bp Feature: gene Location: 662218-664716 bp Ori: KSN68228.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 662221-662662 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 662221-662662 bp Feature: gene Location: 665754-666494 bp Ori: KSN68257.2 Feature: domain Description: YeeA Location: 665769-666360 bp Feature: domain Description: YeeA Location: 665769-666360 bp Feature: gene Location: 666498-668369 bp Ori: KSN68229.1 Feature: domain Description: DUF262 Location: 666546-667314 bp Feature: domain Description: DUF262 Location: 66654 6-667314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)