myRT

myRT report for GCA_001452565.1_WH-SGI-V-07693

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Seq: LLSN01000003.1 Pseudomonas aeruginosa strain WH-SGI-V-07693 WH-SGI-V-07693_contig100, whole genome shotgun sequence (1861 bp)
Overview 1 RT 1: 65-1235 bp Neighborhood of RT #1 [65, 1333] RVT-GII GIIM Feature: gene Location: 65-1333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: domain Description: GIIM Note: maturase Location: 1013-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 3-1 235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LLSN01000124.1 Pseudomonas aeruginosa strain WH-SGI-V-07693 WH-SGI-V-07693_contig3, whole genome shotgun sequence (387535 bp)
Overview 1 RT 1: 62318-70517 bp 2 RT 2: 86782-97081 bp Neighborhood of RT #1 [62318, 70525] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86782, 97092] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 62318-63334 bp Feature: domain Description: COG3178 Location: 62321-63320 bp Feature: domain Description: COG3178 Location: 62 32 1-6332 0 bp Feature: gene Location: 64207-64419 bp Feature: gene Location: 64606-66318 bp Feature: RT Description: RVT_N Location: 64663-64906 bp Feature: RT Description: RVT_N Location: 64663-64906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64951-65584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64951-65584 bp Feature: domain Description: YkfC Location: 65797-65947 bp Feature: domain Description: YkfC Location: 65797-65947 bp Feature: domain Description: HNH Note: nucleases Location: 66124-66262 bp Feature: domain Description: HNH Note: nucleases Location: 6612 4-662 62 bp Feature: gene Location: 66451-69252 bp Feature: domain Description: LptD Location: 66646-69238 bp Feature: domain Description: LptD Location: 66646-692 38 bp Feature: gene Location: 69233-70525 bp Feature: domain Description: PRK10770 Location: 69323-70517 bp Feature: domain Description: PRK10770 Location: 6932 3-70517 bp Feature: gene Location: 86782-88635 bp Feature: domain Description: PRK05658 Location: 86794-88633 bp Feature: domain Description: PRK05658 Location: 86794-88633 bp Feature: gene Location: 88742-92479 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88850-89507 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 88850-89507 bp Feature: domain Description: PRK09776 Location: 89720-90191 bp Feature: domain Description: PRK09776 Location: 8972 0-90191 bp Feature: domain Description: PAS Location: 90236-90773 bp Feature: domain Description: PAS Location: 902 36-90773 bp Feature: domain Description: PRK10060 Location: 90782-92429 bp Feature: domain Description: PRK10060 Location: 90782 -92 42 9 bp Feature: gene Location: 93560-95245 bp Feature: RT Description: RVT_N Location: 93617-93857 bp Feature: RT Description: RVT_N Location: 93617-93857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93905-94541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93905-94541 bp Feature: domain Description: GIIM Note: maturase Location: 94595-94826 bp Feature: domain Description: GIIM Note: maturase Location: 94595-9482 6 bp Feature: domain Description: HNH Note: nucleases Location: 95078-95216 bp Feature: domain Description: HNH Note: nucleases Location: 95078-952 16 bp Feature: gene Location: 95548-95709 bp Feature: gene Location: 95971-97092 bp Feature: domain Description: COG3177 Location: 95989-97081 bp Feature: domain Description: COG3177 Location: 95989-97081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )