myRT

myRT report for GCA_001452615.1_WH-SGI-V-07699

Download annotations/find similar RTs

Seq: LLST01000120.1 Pseudomonas aeruginosa strain WH-SGI-V-07699 WH-SGI-V-07699_contig9, whole genome shotgun sequence (224069 bp)
Overview 1 RT 1: 125078-135383 bp 2 RT 2: 151642-159808 bp Neighborhood of RT #1 [125078, 135385] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [151642, 159822] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 125078-126199 bp Ori: KSO79955.1 Feature: domain Description: COG3177 Location: 125096-126188 bp Feature: domain Description: COG31 77 Location: 1 25096-1 261 88 bp Feature: gene Location: 126458-126594 bp Feature: gene Location: 126922-128607 bp Ori: KSO79956.1 Feature: domain Description: RVT_N Location: 126979-127219 bp Feature: domain Description: RVT_N Location: 1 26979-1 2721 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127267-127903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27267-1 27903 bp Feature: domain Description: GIIM Note: maturase Location: 127957-128188 bp Feature: domain Description: GIIM Note: maturase Location: 1 27957-1 281 88 bp Feature: domain Description: HNH Note: nucleases Location: 128440-128578 bp Feature: domain Description: HNH Note: nucleases Location: 1 28440-1 28578 bp Feature: gene Location: 129688-133425 bp Ori: KSO79957.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 129796-130453 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 29796-1 30453 bp Feature: domain Description: PRK09776 Location: 130666-131137 bp Feature: domain Description: PRK09776 Location: 1 30666-1 31 1 37 bp Feature: domain Description: PAS Location: 131194-131719 bp Feature: domain Description: PAS Location: 1 31 1 94-1 31 71 9 bp Feature: domain Description: PRK10060 Location: 131731-133375 bp Feature: domain Description: PRK1 0060 Location: 1 31 731 -1 33375 bp Feature: gene Location: 133532-135385 bp Ori: KSO79958.1 Feature: domain Description: PRK05658 Location: 133544-135383 bp Feature: domain Description: PRK05658 Location: 1 33544-1 35383 bp Feature: gene Location: 151642-152934 bp Ori: KSO79976.1 Feature: domain Description: PRK10770 Location: 151732-152926 bp Feature: domain Description: PRK1 0770 Location: 1 51 732-1 52926 bp Feature: gene Location: 152915-155689 bp Ori: KSO79977.1 Feature: domain Description: LptD Location: 153110-155675 bp Feature: domain Description: LptD Location: 1 531 1 0-1 55675 bp Feature: gene Location: 155822-157534 bp Ori: KSO79978.1 Feature: domain Description: RVT_N Location: 155879-156122 bp Feature: domain Description: RVT_N Location: 1 55879-1 561 22 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156167-156803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 561 67-1 56803 bp Feature: domain Description: YkfC Location: 157013-157163 bp Feature: domain Description: YkfC Location: 1 5701 3-1 571 63 bp Feature: domain Description: HNH Note: nucleases Location: 157340-157478 bp Feature: domain Description: HNH Note: nucleases Location: 1 57340-1 57478 bp Feature: gene Location: 157679-157933 bp Feature: gene Location: 158806-159822 bp Ori: KSO79979.1 Feature: domain Description: COG3178 Location: 158809-159808 bp Feature: domain Description: COG31 78 Location: 1 58809-1 59808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLST01000053.1 Pseudomonas aeruginosa strain WH-SGI-V-07699 WH-SGI-V-07699_contig29, whole genome shotgun sequence (65559 bp)
Overview 1 RT 1: 30294-36213 bp Neighborhood of RT #1 [30294, 36213] resist_ArsH KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 30294-31016 bp Ori: KSO86280.1 Feature: domain Description: resist_ArsH Location: 30318-30972 bp Feature: domain Description: resist_ArsH Location: 30318-30972 bp Feature: gene Location: 31074-32354 bp Feature: domain Description: KOG0389 Location: 31125-31248 bp Feature: domain Description: KOG0389 Location: 3112 5-312 48 bp Feature: domain Description: SF2_C_SNF Location: 31794-32190 bp Feature: domain Description: SF2 _C_SNF Location: 31794-32 190 bp Feature: gene Location: 32401-34119 bp Ori: KSO86281.1 Feature: domain Description: RVT_N Location: 32458-32695 bp Feature: domain Description: RVT_N Location: 32 458-32 695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32746-33397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 746-33397 bp Feature: domain Description: GIIM Note: maturase Location: 33451-33682 bp Feature: domain Description: GIIM Note: maturase Location: 33451-33682 bp Feature: domain Description: HNHc Note: nucleases Location: 33916-34072 bp Feature: domain Description: HNHc Note: nucleases Location: 33916-34072 bp Feature: gene Location: 34716-35771 bp Ori: OPE24841.1 Feature: domain Description: DEXHc_Snf Location: 34935-35190 bp Feature: domain Description: DEXHc_Snf Location: 34935-35190 bp Feature: gene Location: 35908-36213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT resist_ArsH (TIGR02690), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: LLST01000052.1 Pseudomonas aeruginosa strain WH-SGI-V-07699 WH-SGI-V-07699_contig28, whole genome shotgun sequence (66369 bp)
Overview 1 RT 1: 62412-66057 bp Neighborhood of RT #1 [62412, 66161] COG4127 AlpA RVT-UG5 nitrilase Feature: gene Location: 62412-63404 bp Ori: KSO86381.1 Feature: domain Description: COG4127 Location: 62418-63393 bp Feature: domain Description: COG4127 Location: 62418-63 3 93 bp Feature: gene Location: 63409-63621 bp Ori: OPE24852.1 Feature: domain Description: AlpA Location: 63412-63583 bp Feature: domain Description: AlpA Location: 63 412-63 583 bp Feature: gene Location: 63774-66161 bp Ori: KSO86386.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 63804-64113 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 63 804-64113 bp Feature: domain Description: nitrilase Location: 65475-66057 bp Feature: domain Description: nitrilase Location: 65475-66057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424)