myRT

myRT report for GCA_001452665.1_WH-SGI-V-07702

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Seq: LLSW01000064.1 Pseudomonas aeruginosa strain WH-SGI-V-07702 WH-SGI-V-07702_contig4, whole genome shotgun sequence (470693 bp)
Overview 1 RT 1: 50116-58286 bp 2 RT 2: 74550-84846 bp Neighborhood of RT #1 [50116, 58294] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74550, 84857] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50116-51132 bp Ori: KSO90815.1 Feature: domain Description: COG3178 Location: 50119-51118 bp Feature: domain Description: COG31 78 Location: 501 1 9-51 1 1 8 bp Feature: gene Location: 52005-52217 bp Feature: gene Location: 52405-54117 bp Ori: KSO90816.1 Feature: domain Description: RVT_N Location: 52462-52705 bp Feature: domain Description: RVT_N Location: 52462-52705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52750-53386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52750-53386 bp Feature: domain Description: YkfC Location: 53596-53746 bp Feature: domain Description: YkfC Location: 53596-53746 bp Feature: domain Description: HNH Note: nucleases Location: 53923-54061 bp Feature: domain Description: HNH Note: nucleases Location: 53923-54061 bp Feature: gene Location: 54250-57021 bp Ori: KSO90817.1 Feature: domain Description: LptD Location: 54445-57007 bp Feature: domain Description: LptD Location: 54445-57007 bp Feature: gene Location: 57002-58294 bp Ori: KSO90818.1 Feature: domain Description: PRK10770 Location: 57092-58286 bp Feature: domain Description: PRK1 0770 Location: 57092-58286 bp Feature: gene Location: 74550-76403 bp Ori: KSO90836.1 Feature: domain Description: PRK05658 Location: 74562-76401 bp Feature: domain Description: PRK05658 Location: 74562-76401 bp Feature: gene Location: 76510-80247 bp Ori: KSO90837.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76618-77275 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7661 8-77275 bp Feature: domain Description: PRK09776 Location: 77488-77959 bp Feature: domain Description: PRK09776 Location: 77488-77959 bp Feature: domain Description: PAS Location: 78016-78541 bp Feature: domain Description: PAS Location: 7801 6-78541 bp Feature: domain Description: PRK10060 Location: 78553-80197 bp Feature: domain Description: PRK1 0060 Location: 78553-801 97 bp Feature: gene Location: 81328-83013 bp Ori: KSO90838.1 Feature: domain Description: RVT_N Location: 81385-81625 bp Feature: domain Description: RVT_N Location: 81 385-81 625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81673-82309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 673-82309 bp Feature: domain Description: GIIM Note: maturase Location: 82363-82594 bp Feature: domain Description: GIIM Note: maturase Location: 82363-82594 bp Feature: domain Description: HNH Note: nucleases Location: 82846-82984 bp Feature: domain Description: HNH Note: nucleases Location: 82846-82984 bp Feature: gene Location: 83341-83477 bp Feature: gene Location: 83736-84857 bp Ori: KSO90839.1 Feature: domain Description: COG3177 Location: 83754-84846 bp Feature: domain Description: COG31 77 Location: 83754-84846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: LLSW01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07702 WH-SGI-V-07702_contig11, whole genome shotgun sequence (240339 bp)
Overview 1 RT 1: 93194-97911 bp Neighborhood of RT #1 [93194, 97946] SdhE RVT_N RVT-GII YkfC HNH YgfZ Feature: gene Location: 93194-93646 bp Feature: gene Location: 93630-93884 bp Ori: KSP00076.1 Feature: domain Description: SdhE Location: 93636-93876 bp Feature: domain Description: SdhE Location: 93636-93876 bp Feature: gene Location: 93960-95681 bp Ori: KSP00077.1 Feature: domain Description: RVT_N Location: 94017-94254 bp Feature: domain Description: RVT_N Location: 94017-942 54 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94305-94941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94305-94941 bp Feature: domain Description: YkfC Location: 95139-95295 bp Feature: domain Description: YkfC Location: 95139-952 95 bp Feature: domain Description: HNH Note: nucleases Location: 95478-95616 bp Feature: domain Description: HNH Note: nucleases Location: 95478-95616 bp Feature: gene Location: 95768-96045 bp Feature: gene Location: 97002-97946 bp Ori: KSP00078.1 Feature: domain Description: YgfZ Location: 97011-97911 bp Feature: domain Description: YgfZ Location: 97011-97911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354)

Seq: LLSW01000062.1 Pseudomonas aeruginosa strain WH-SGI-V-07702 WH-SGI-V-07702_contig38, whole genome shotgun sequence (36345 bp)
Overview 1 RT 1: 25994-34166 bp Neighborhood of RT #1 [25994, 34360] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25994-27865 bp Ori: KSO91851.1 Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: gene Location: 27869-28609 bp Ori: KSO91857.2 Feature: domain Description: YeeA Location: 27884-28475 bp Feature: domain Description: YeeA Location: 27884-28475 bp Feature: gene Location: 29647-32145 bp Ori: KSO91852.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-3 0091 bp Feature: gene Location: 32664-33221 bp Feature: gene Location: 33221-34360 bp Ori: KSO91854.1 Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_21 Location: 3 3 293 -3 3 3 62 bp Feature: domain Description: AAA_21 Location: 33836-34166 bp Feature: domain Description: AAA_21 Location: 3 3 83 6-3 4166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: LLSW01000002.1 Pseudomonas aeruginosa strain WH-SGI-V-07702 WH-SGI-V-07702_contig10, whole genome shotgun sequence (260198 bp)
Overview 1 RT 1: 254429-260198 bp Neighborhood of RT #1 [254429, 260198] CHD CHD RVT-GII GIIM Feature: gene Location: 254429-255973 bp Ori: KSP01246.1 Feature: domain Description: CHD Location: 254645-255059 bp Feature: domain Description: CHD Location: 254 64 5-255059 bp Feature: domain Description: CHD Location: 255287-255776 bp Feature: domain Description: CHD Location: 255287-255776 bp Feature: gene Location: 257492-257818 bp Feature: gene Location: 257968-259236 bp Ori: KSP01247.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258181-258838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258181-258838 bp Feature: domain Description: GIIM Note: maturase Location: 258916-259138 bp Feature: domain Description: GIIM Note: maturase Location: 258916-259138 bp Feature: gene Location: 259756-260198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)