myRT

myRT report for GCA_001452685.1_WH-SGI-V-07704

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Seq: LLSY01000018.1 Pseudomonas aeruginosa strain WH-SGI-V-07704 WH-SGI-V-07704_contig25, whole genome shotgun sequence (76738 bp)
Overview 1 RT 1: 30226-39893 bp Neighborhood of RT #1 [30226, 39898] DUF262 HATPase_c_3 RVT-Retrons DUF4354 CoxL Feature: gene Location: 30226-31889 bp Feature: domain Description: DUF262 Location: 30331-30457 bp Feature: domain Description: DUF262 Location: 30331 -30457 bp Feature: gene Location: 31998-33953 bp Feature: domain Description: HATPase_c_3 Location: 32067-32415 bp Feature: domain Description: HATPase_c_3 Location: 32067-3241 5 bp Feature: gene Location: 34134-35087 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34245-34839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34245-34839 bp Feature: gene Location: 36819-37199 bp Feature: domain Description: DUF4354 Location: 36822-37188 bp Feature: domain Description: DUF4354 Location: 36822-371 88 bp Feature: gene Location: 37694-39898 bp Feature: domain Description: CoxL Location: 37712-39893 bp Feature: domain Description: CoxL Location: 3771 2-39893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), HATPase_c_3 (pfam13589), RVT-Retrons, DUF4354 (pfam14263), CoxL (COG1529)

Seq: LLSY01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07704 WH-SGI-V-07704_contig2, whole genome shotgun sequence (495660 bp)
Overview 1 RT 1: 441743-445789 bp Neighborhood of RT #1 [441743, 445818] RVT-GII GIIM DUF3085 Feature: gene Location: 441743-442459 bp Feature: gene Location: 442501-442799 bp Feature: gene Location: 442880-444250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443216-443831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4432 16-443831 bp Feature: domain Description: GIIM Note: maturase Location: 443888-444104 bp Feature: domain Description: GIIM Note: maturase Location: 443888-444104 bp Feature: gene Location: 444590-445387 bp Feature: gene Location: 445453-445818 bp Feature: domain Description: DUF3085 Location: 445519-445789 bp Feature: domain Description: DUF3085 Location: 445519-445789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3085 (pfam11284)