myRT

myRT report for GCA_001452725.1_WH-SGI-V-07706

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Seq: LLTA01000011.1 Pseudomonas aeruginosa strain WH-SGI-V-07706 WH-SGI-V-07706_contig19, whole genome shotgun sequence (154456 bp)
Overview 1 RT 1: 98136-103834 bp Neighborhood of RT #1 [98136, 103842] COG4127 AlpA RVT-UG5 HTH_Tnp_1 PHA02517 Feature: gene Location: 98136-99128 bp Ori: KSO50236.1 Feature: domain Description: COG4127 Location: 98142-99117 bp Feature: domain Description: COG41 27 Location: 981 42-991 1 7 bp Feature: gene Location: 99133-99345 bp Ori: OPE25578.1 Feature: domain Description: AlpA Location: 99136-99307 bp Feature: domain Description: AlpA Location: 991 36-99307 bp Feature: gene Location: 99498-102545 bp Ori: KSO50237.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 99996-100497 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 99996-1 00497 bp Feature: gene Location: 102652-103378 bp Feature: domain Description: HTH_Tnp_1 Location: 102658-102862 bp Feature: domain Description: HTH_Tnp_1 Location: 1 02658-1 02862 bp Feature: gene Location: 103444-103842 bp Ori: OPE25579.1 Feature: domain Description: PHA02517 Location: 103450-103834 bp Feature: domain Description: PHA0251 7 Location: 1 03450-1 03834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LLTA01000078.1 Pseudomonas aeruginosa strain WH-SGI-V-07706 WH-SGI-V-07706_contig8, whole genome shotgun sequence (233448 bp)
Overview 1 RT 1: 134465-144770 bp 2 RT 2: 161029-169196 bp Neighborhood of RT #1 [134465, 144772] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [161029, 169210] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 134465-135586 bp Ori: KSO39099.1 Feature: domain Description: COG3177 Location: 134483-135575 bp Feature: domain Description: COG3177 Location: 134483-135575 bp Feature: gene Location: 135845-135981 bp Feature: gene Location: 136309-137994 bp Ori: KSO39100.1 Feature: domain Description: RVT_N Location: 136366-136606 bp Feature: domain Description: RVT_N Location: 136366-136606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136654-137290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136654-1372 90 bp Feature: domain Description: GIIM Note: maturase Location: 137344-137575 bp Feature: domain Description: GIIM Note: maturase Location: 137344-137575 bp Feature: domain Description: HNH Note: nucleases Location: 137827-137965 bp Feature: domain Description: HNH Note: nucleases Location: 13782 7-137965 bp Feature: gene Location: 139075-142812 bp Ori: KSO39101.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 139183-139840 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 139183-139840 bp Feature: domain Description: PRK09776 Location: 140053-140524 bp Feature: domain Description: PRK09776 Location: 140053-14052 4 bp Feature: domain Description: PAS Location: 140581-141106 bp Feature: domain Description: PAS Location: 140581-141106 bp Feature: domain Description: PRK10060 Location: 141118-142762 bp Feature: domain Description: PRK10060 Location: 141118-142 762 bp Feature: gene Location: 142919-144772 bp Ori: KSO39102.1 Feature: domain Description: PRK05658 Location: 142931-144770 bp Feature: domain Description: PRK05658 Location: 142 931-144770 bp Feature: gene Location: 161029-162321 bp Ori: KSO39120.1 Feature: domain Description: PRK10770 Location: 161119-162313 bp Feature: domain Description: PRK10770 Location: 161119-162 313 bp Feature: gene Location: 162302-165076 bp Ori: KSO39121.1 Feature: domain Description: LptD Location: 162497-165062 bp Feature: domain Description: LptD Location: 162 497-165062 bp Feature: gene Location: 165209-166921 bp Ori: KSO39122.1 Feature: domain Description: RVT_N Location: 165266-165509 bp Feature: domain Description: RVT_N Location: 1652 66-165509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165554-166190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165554-166190 bp Feature: domain Description: YkfC Location: 166400-166550 bp Feature: domain Description: YkfC Location: 166400-166550 bp Feature: domain Description: HNH Note: nucleases Location: 166727-166865 bp Feature: domain Description: HNH Note: nucleases Location: 16672 7-166865 bp Feature: gene Location: 167109-167321 bp Feature: gene Location: 168194-169210 bp Ori: KSO39123.1 Feature: domain Description: COG3178 Location: 168197-169196 bp Feature: domain Description: COG3178 Location: 168197-169196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )