myRT

myRT report for GCA_001452825.1_WH-SGI-V-07248

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Seq: LLTI01000045.1 Pseudomonas aeruginosa strain WH-SGI-V-07248 WH-SGI-V-07248_contig5, whole genome shotgun sequence (409082 bp)
Overview 1 RT 1: 71605-81904 bp Neighborhood of RT #1 [71605, 81915] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 71605-73458 bp Feature: domain Description: PRK05658 Location: 71617-73456 bp Feature: domain Description: PRK05658 Location: 71 61 7-73456 bp Feature: gene Location: 73565-77302 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73673-74330 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73673-74330 bp Feature: domain Description: PRK09776 Location: 74543-75014 bp Feature: domain Description: PRK09776 Location: 74543-7501 4 bp Feature: domain Description: PAS Location: 75071-75596 bp Feature: domain Description: PAS Location: 75071 -75596 bp Feature: domain Description: PRK10060 Location: 75605-77252 bp Feature: domain Description: PRK1 0060 Location: 75605-77252 bp Feature: gene Location: 78383-80068 bp Feature: RT Description: RVT_N Location: 78440-78680 bp Feature: RT Description: RVT_N Location: 78440-78680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78728-79364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78728-79364 bp Feature: domain Description: GIIM Note: maturase Location: 79418-79649 bp Feature: domain Description: GIIM Note: maturase Location: 7941 8-79649 bp Feature: domain Description: HNH Note: nucleases Location: 79901-80039 bp Feature: domain Description: HNH Note: nucleases Location: 79901 -80039 bp Feature: gene Location: 80371-80532 bp Feature: gene Location: 80794-81915 bp Feature: domain Description: COG3177 Location: 80812-81904 bp Feature: domain Description: COG31 77 Location: 8081 2-81 904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )