myRT

myRT report for GCA_001452915.1_WH-SGI-V-07254

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Seq: LLTO01000027.1 Pseudomonas aeruginosa strain WH-SGI-V-07254 WH-SGI-V-07254_contig28, whole genome shotgun sequence (66621 bp)
Overview 1 RT 1: 62412-66621 bp Neighborhood of RT #1 [62412, 66621] COG4127 AlpA RVT-UG5 nitrilase Feature: gene Location: 62412-63404 bp Ori: KSP76378.1 Feature: domain Description: COG4127 Location: 62418-63393 bp Feature: domain Description: COG41 27 Location: 6241 8-63393 bp Feature: gene Location: 63409-63621 bp Ori: OPE30547.1 Feature: domain Description: AlpA Location: 63412-63583 bp Feature: domain Description: AlpA Location: 6341 2-63583 bp Feature: gene Location: 63774-66263 bp Ori: KSP76379.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 63780-64215 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 63780-6421 5 bp Feature: domain Description: nitrilase Location: 65577-66159 bp Feature: domain Description: nitrilase Location: 65577-661 59 bp Feature: gene Location: 66348-66621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424)

Seq: LLTO01000084.1 Pseudomonas aeruginosa strain WH-SGI-V-07254 WH-SGI-V-07254_contig8, whole genome shotgun sequence (211891 bp)
Overview 1 RT 1: 126646-136952 bp 2 RT 2: 153210-161392 bp Neighborhood of RT #1 [126646, 136954] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [153210, 161406] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 126646-127767 bp Ori: KSP70950.1 Feature: domain Description: COG3177 Location: 126664-127756 bp Feature: domain Description: COG3177 Location: 12 6664-12 7756 bp Feature: gene Location: 128026-128163 bp Feature: gene Location: 128491-130176 bp Ori: KSP70952.1 Feature: domain Description: RVT_N Location: 128548-128788 bp Feature: domain Description: RVT_N Location: 12 8548-12 8788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128836-129472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 8836-12 9472 bp Feature: domain Description: GIIM Note: maturase Location: 129526-129757 bp Feature: domain Description: GIIM Note: maturase Location: 12 952 6-12 9757 bp Feature: domain Description: HNH Note: nucleases Location: 130009-130147 bp Feature: domain Description: HNH Note: nucleases Location: 130009-130147 bp Feature: gene Location: 131257-134994 bp Ori: KSP70953.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 131365-132022 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 131365-132 02 2 bp Feature: domain Description: PRK09776 Location: 132235-132706 bp Feature: domain Description: PRK09776 Location: 132 2 35-132 706 bp Feature: domain Description: PAS Location: 132763-133288 bp Feature: domain Description: PAS Location: 132 763-1332 88 bp Feature: domain Description: PRK10060 Location: 133297-134944 bp Feature: domain Description: PRK10060 Location: 1332 97-134944 bp Feature: gene Location: 135101-136954 bp Ori: KSP70954.1 Feature: domain Description: PRK05658 Location: 135113-136952 bp Feature: domain Description: PRK05658 Location: 135113-136952 bp Feature: gene Location: 153210-154502 bp Ori: KSP70972.1 Feature: domain Description: PRK10770 Location: 153300-154494 bp Feature: domain Description: PRK10770 Location: 153300-154494 bp Feature: gene Location: 154483-157272 bp Ori: KSP70973.1 Feature: domain Description: LptD Location: 154678-157258 bp Feature: domain Description: LptD Location: 154678-1572 58 bp Feature: gene Location: 157405-159117 bp Ori: KSP70974.1 Feature: domain Description: RVT_N Location: 157462-157705 bp Feature: domain Description: RVT_N Location: 157462 -157705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157750-158386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157750-158386 bp Feature: domain Description: YkfC Location: 158593-158746 bp Feature: domain Description: YkfC Location: 158593-158746 bp Feature: domain Description: HNH Note: nucleases Location: 158923-159061 bp Feature: domain Description: HNH Note: nucleases Location: 15892 3-159061 bp Feature: gene Location: 159305-159517 bp Feature: gene Location: 160390-161406 bp Ori: KSP70975.1 Feature: domain Description: COG3178 Location: 160393-161392 bp Feature: domain Description: COG3178 Location: 160393-161392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )