myRT

myRT report for GCA_001452935.1_WH-SGI-V-07258

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Seq: LLTR01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07258 WH_SGI_V_07258_3, whole genome shotgun sequence (706961 bp)
Overview 1 RT 1: 608030-618338 bp 2 RT 2: 634596-642780 bp Neighborhood of RT #1 [608030, 618340] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [634596, 642794] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 608030-609151 bp Feature: domain Description: COG3177 Location: 608048-609140 bp Feature: domain Description: COG31 77 Location: 608048-6091 40 bp Feature: gene Location: 609413-609574 bp Feature: gene Location: 609877-611562 bp Feature: RT Description: RVT_N Location: 609934-610174 bp Feature: RT Description: RVT_N Location: 609934-61 01 74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610222-610858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 0222-61 0858 bp Feature: domain Description: GIIM Note: maturase Location: 610912-611143 bp Feature: domain Description: GIIM Note: maturase Location: 61 091 2-61 1 1 43 bp Feature: domain Description: HNH Note: nucleases Location: 611395-611533 bp Feature: domain Description: HNH Note: nucleases Location: 61 1 395-61 1 533 bp Feature: gene Location: 612643-616380 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 612751-613408 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61 2751 -61 3408 bp Feature: domain Description: PRK09776 Location: 613621-614092 bp Feature: domain Description: PRK09776 Location: 61 3621 -61 4092 bp Feature: domain Description: PAS Location: 614143-614674 bp Feature: domain Description: PAS Location: 61 41 43-61 4674 bp Feature: domain Description: PRK10060 Location: 614683-616330 bp Feature: domain Description: PRK1 0060 Location: 61 4683-61 6330 bp Feature: gene Location: 616487-618340 bp Feature: domain Description: PRK05658 Location: 616499-618338 bp Feature: domain Description: PRK05658 Location: 61 6499-61 8338 bp Feature: gene Location: 634596-635888 bp Feature: domain Description: PRK10770 Location: 634686-635880 bp Feature: domain Description: PRK1 0770 Location: 634686-635880 bp Feature: gene Location: 635869-638661 bp Feature: domain Description: LptD Location: 636064-638647 bp Feature: domain Description: LptD Location: 636064-638647 bp Feature: gene Location: 638794-640506 bp Feature: RT Description: RVT_N Location: 638851-639094 bp Feature: RT Description: RVT_N Location: 638851 -639094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 639139-639772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6391 39-639772 bp Feature: domain Description: YkfC Location: 639985-640135 bp Feature: domain Description: YkfC Location: 639985-6401 35 bp Feature: domain Description: HNH Note: nucleases Location: 640312-640450 bp Feature: domain Description: HNH Note: nucleases Location: 64031 2-640450 bp Feature: gene Location: 640693-640905 bp Feature: gene Location: 641778-642794 bp Feature: domain Description: COG3178 Location: 641781-642780 bp Feature: domain Description: COG31 78 Location: 641 781 -642780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )