myRT

myRT report for GCA_001453015.1_WH-SGI-V-07263

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Seq: LLTV01000016.1 Pseudomonas aeruginosa strain WH-SGI-V-07263 WH-SGI-V-07263_contig23, whole genome shotgun sequence (68152 bp)
Overview 1 RT 1: 64085-68029 bp Neighborhood of RT #1 [64085, 68085] COG3178 RVT_N RVT-GII YkfC HNH Feature: gene Location: 64085-65101 bp Feature: domain Description: COG3178 Location: 64088-65087 bp Feature: domain Description: COG31 78 Location: 64088-65087 bp Feature: gene Location: 65974-66186 bp Feature: gene Location: 66373-68085 bp Feature: RT Description: RVT_N Location: 66430-66673 bp Feature: RT Description: RVT_N Location: 66430-66673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66718-67351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6671 8-67351 bp Feature: domain Description: YkfC Location: 67564-67714 bp Feature: domain Description: YkfC Location: 67564-6771 4 bp Feature: domain Description: HNH Note: nucleases Location: 67891-68029 bp Feature: domain Description: HNH Note: nucleases Location: 67891 -68029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: LLTV01000056.1 Pseudomonas aeruginosa strain WH-SGI-V-07263 WH-SGI-V-07263_contig6, whole genome shotgun sequence (444869 bp)
Overview 1 RT 1: 188322-191804 bp Neighborhood of RT #1 [188322, 191833] IS5 RVT-GII InsE TnpB_IS66 Feature: gene Location: 188322-189302 bp Feature: domain Description: IS5 Location: 188511-189270 bp Feature: domain Description: IS5 Location: 188511-1892 70 bp Feature: gene Location: 189519-189704 bp Feature: gene Location: 189640-191040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190354-190966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190354-190966 bp Feature: gene Location: 191196-191501 bp Feature: domain Description: InsE Location: 191202-191394 bp Feature: domain Description: InsE Location: 1912 02 -191394 bp Feature: gene Location: 191495-191833 bp Feature: domain Description: TnpB_IS66 Location: 191516-191804 bp Feature: domain Description: TnpB_IS66 Location: 191516-191804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, InsE (COG2963), TnpB_IS66 (pfam05717)

Seq: LLTV01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07263 WH-SGI-V-07263_contig3, whole genome shotgun sequence (624892 bp)
Overview 1 RT 1: 20621-30920 bp Neighborhood of RT #1 [20621, 30931] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 20621-22474 bp Feature: domain Description: PRK05658 Location: 20633-22472 bp Feature: domain Description: PRK05658 Location: 2063 3 -22472 bp Feature: gene Location: 22581-26318 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 22689-23346 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 22689-23 3 46 bp Feature: domain Description: PRK09776 Location: 23559-24030 bp Feature: domain Description: PRK09776 Location: 23 559-2403 0 bp Feature: domain Description: PAS Location: 24087-24612 bp Feature: domain Description: PAS Location: 24087-24612 bp Feature: domain Description: PRK10060 Location: 24621-26268 bp Feature: domain Description: PRK10060 Location: 24621-26268 bp Feature: gene Location: 27399-29084 bp Feature: RT Description: RVT_N Location: 27456-27696 bp Feature: RT Description: RVT_N Location: 27456-27696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27744-28380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27744-283 80 bp Feature: domain Description: GIIM Note: maturase Location: 28434-28665 bp Feature: domain Description: GIIM Note: maturase Location: 2843 4-28665 bp Feature: domain Description: HNH Note: nucleases Location: 28917-29055 bp Feature: domain Description: HNH Note: nucleases Location: 28917-29055 bp Feature: gene Location: 29387-29548 bp Feature: gene Location: 29810-30931 bp Feature: domain Description: COG3177 Location: 29828-30920 bp Feature: domain Description: COG3 177 Location: 29828-3 0920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )