myRT

myRT report for GCA_001453025.1_WH-SGI-V-07267

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Seq: LLTY01000123.1 Pseudomonas aeruginosa strain WH-SGI-V-07267 WH_SGI_V_07267_40, whole genome shotgun sequence (42049 bp)
Overview 1 RT 1: 19705-25641 bp Neighborhood of RT #1 [19705, 26597] InsE DEXHc_Snf SF2_C_SNF RVT_N RVT-GII GIIM DEXHc_Snf AdoMet_MTases Feature: gene Location: 19705-19998 bp Ori: KSQ52832.1 Feature: domain Description: InsE Location: 19714-19984 bp Feature: domain Description: InsE Location: 1 971 4-1 9984 bp Feature: gene Location: 20612-21856 bp Feature: domain Description: DEXHc_Snf Location: 20633-20786 bp Feature: domain Description: DEXHc_Snf Location: 20633-20786 bp Feature: domain Description: SF2_C_SNF Location: 21317-21692 bp Feature: domain Description: SF2_C_SNF Location: 21 31 7-21 692 bp Feature: gene Location: 21939-23554 bp Feature: domain Description: RVT_N Location: 21996-22233 bp Feature: domain Description: RVT_N Location: 21 996-22233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22284-22935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22284-22935 bp Feature: domain Description: GIIM Note: maturase Location: 22989-23220 bp Feature: domain Description: GIIM Note: maturase Location: 22989-23220 bp Feature: gene Location: 24172-25047 bp Feature: domain Description: DEXHc_Snf Location: 24364-24610 bp Feature: domain Description: DEXHc_Snf Location: 24364-2461 0 bp Feature: gene Location: 25152-26597 bp Ori: KSQ52833.1 Feature: domain Description: AdoMet_MTases Location: 25275-25641 bp Feature: domain Description: AdoMet_MTases Location: 25275-25641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), DEXHc_Snf (cd17919), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AdoMet_MTases (cl17173)

Seq: LLTY01000166.1 Pseudomonas aeruginosa strain WH-SGI-V-07267 WH_SGI_V_07267_8, whole genome shotgun sequence (230682 bp)
Overview 1 RT 1: 64441-72613 bp Neighborhood of RT #1 [64441, 72621] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 64441-65457 bp Ori: KSQ45965.1 Feature: domain Description: COG3178 Location: 64444-65443 bp Feature: domain Description: COG3178 Location: 64444-65443 bp Feature: gene Location: 66330-66542 bp Feature: gene Location: 66729-68441 bp Ori: KSQ45966.1 Feature: domain Description: RVT_N Location: 66786-67029 bp Feature: domain Description: RVT_N Location: 66786-6702 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67074-67710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67074-67710 bp Feature: domain Description: YkfC Location: 67920-68070 bp Feature: domain Description: YkfC Location: 6792 0-68070 bp Feature: domain Description: HNH Note: nucleases Location: 68247-68385 bp Feature: domain Description: HNH Note: nucleases Location: 682 47-68385 bp Feature: gene Location: 68574-71348 bp Ori: KSQ45967.1 Feature: domain Description: LptD Location: 68769-71334 bp Feature: domain Description: LptD Location: 68769-71334 bp Feature: gene Location: 71329-72621 bp Ori: KSQ45968.1 Feature: domain Description: PRK10770 Location: 71419-72613 bp Feature: domain Description: PRK10770 Location: 71419-72 613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: LLTY01000104.1 Pseudomonas aeruginosa strain WH-SGI-V-07267 WH_SGI_V_07267_23, whole genome shotgun sequence (118077 bp)
Overview 1 RT 1: 113932-117994 bp Neighborhood of RT #1 [113932, 118077] COG4127 AlpA RVT-UG5 nitrilase rve_3 Feature: gene Location: 113932-114924 bp Ori: KSQ57364.1 Feature: domain Description: COG4127 Location: 113938-114913 bp Feature: domain Description: COG4127 Location: 113 93 8-114913 bp Feature: gene Location: 114929-115141 bp Ori: OPE33831.1 Feature: domain Description: AlpA Location: 114932-115103 bp Feature: domain Description: AlpA Location: 11493 2-115103 bp Feature: gene Location: 115294-117783 bp Ori: KSQ57365.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 115300-115735 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1153 00-11573 5 bp Feature: domain Description: nitrilase Location: 117097-117679 bp Feature: domain Description: nitrilase Location: 117097-117679 bp Feature: gene Location: 117868-118077 bp Ori: OPE33833.1 Feature: domain Description: rve_3 Location: 117871-117994 bp Feature: domain Description: rve_3 Location: 117871-117994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424), rve_3 (pfam13683)