myRT

myRT report for GCA_001453095.1_WH-SGI-V-07416

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Seq: LLPD01000003.1 Pseudomonas aeruginosa strain WH-SGI-V-07416 WH-SGI-V-07416_contig11, whole genome shotgun sequence (251676 bp)
Overview 1 RT 1: 229938-233111 bp Neighborhood of RT #1 [229938, 233278] OsmC IS5 RVT-GII GIIM DUF772 Feature: gene Location: 229938-230258 bp Feature: domain Description: OsmC Location: 230157-230256 bp Feature: domain Description: OsmC Location: 2301 57-230256 bp Feature: gene Location: 230448-230918 bp Feature: domain Description: IS5 Location: 230454-230889 bp Feature: domain Description: IS5 Location: 230454-230889 bp Feature: gene Location: 230978-232246 bp Ori: KSI72665.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231191-231848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 1 91 -231 848 bp Feature: domain Description: GIIM Note: maturase Location: 231926-232148 bp Feature: domain Description: GIIM Note: maturase Location: 231 926-2321 48 bp Feature: gene Location: 232635-232730 bp Feature: gene Location: 232766-233278 bp Feature: domain Description: DUF772 Location: 232916-233111 bp Feature: domain Description: DUF772 Location: 23291 6-2331 1 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OsmC (pfam02566), IS5 (COG3039), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: LLPD01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07416 WH-SGI-V-07416_contig2, whole genome shotgun sequence (788780 bp)
Overview 1 RT 1: 1-5538 bp Neighborhood of RT #1 [1, 5549] HTH_Tnp_1 RVT-UG5 AlpA COG4127 Feature: gene Location: 1-238 bp Feature: gene Location: 307-1033 bp Feature: domain Description: HTH_Tnp_1 Location: 313-517 bp Feature: domain Description: HTH_Tnp_1 Location: 313-517 bp Feature: gene Location: 1140-4187 bp Ori: KSI69452.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1638-2139 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1638-2 139 bp Feature: gene Location: 4340-4552 bp Ori: OPD95505.1 Feature: domain Description: AlpA Location: 4343-4514 bp Feature: domain Description: AlpA Location: 4343-4514 bp Feature: gene Location: 4557-5549 bp Ori: KSI69453.1 Feature: domain Description: COG4127 Location: 4563-5538 bp Feature: domain Description: COG412 7 Location: 4563-5538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-UG5, AlpA (COG3311), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily )