myRT

myRT report for GCA_001453285.1_WH-SGI-V-07507

Download annotations/find similar RTs

Seq: LLQN01000005.1 Pseudomonas aeruginosa strain WH-SGI-V-07507 WH-SGI-V-07507_contig13, whole genome shotgun sequence (194678 bp)
Overview 1 RT 1: 3-1570 bp Neighborhood of RT #1 [3, 1602] RVT-GII IS5 Feature: gene Location: 3-284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-21 0 bp Feature: gene Location: 220-405 bp Feature: gene Location: 622-1602 bp Ori: KSK84145.1 Feature: domain Description: IS5 Location: 811-1570 bp Feature: domain Description: IS5 Location: 81 1 -1 570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS5 (COG3039)

Seq: LLQN01000038.1 Pseudomonas aeruginosa strain WH-SGI-V-07507 WH-SGI-V-07507_contig43, whole genome shotgun sequence (2765 bp)
Overview 1 RT 1: 1-1729 bp Neighborhood of RT #1 [1, 1758] RVT-GII InsE TnpB_IS66 Feature: gene Location: 1-965 bp Ori: OPE06063.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 715-964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 715-964 bp Feature: gene Location: 1121-1426 bp Ori: KSK76713.2 Feature: domain Description: InsE Location: 1127-1319 bp Feature: domain Description: InsE Location: 112 7-1319 bp Feature: gene Location: 1420-1758 bp Feature: domain Description: TnpB_IS66 Location: 1441-1729 bp Feature: domain Description: TnpB_IS66 Location: 1441-172 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), TnpB_IS66 (pfam05717)

Seq: LLQN01000004.1 Pseudomonas aeruginosa strain WH-SGI-V-07507 WH-SGI-V-07507_contig12, whole genome shotgun sequence (194797 bp)
Overview 1 RT 1: 3-3041 bp Neighborhood of RT #1 [3, 3073] RVT-GII CSHase HTH_1 PBP2_LTTR_aromatics_like Feature: gene Location: 3-680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-288 bp Feature: gene Location: 1348-2037 bp Ori: KSK84554.1 Feature: domain Description: CSHase Location: 1456-2008 bp Feature: domain Description: CSHase Location: 1456-2008 bp Feature: gene Location: 2162-3073 bp Ori: KSK84555.1 Feature: domain Description: HTH_1 Location: 2189-2366 bp Feature: domain Description: HTH_1 Location: 2189-23 66 bp Feature: domain Description: PBP2_LTTR_aromatics_like Location: 2456-3041 bp Feature: domain Description: PBP2_LTTR_aromatics_like Location: 2456-3 041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, CSHase (cd01015), HTH_1 (pfam00126), PBP2_LTTR_aromatics_like (cd08414)

Seq: LLQN01000042.1 Pseudomonas aeruginosa strain WH-SGI-V-07507 WH-SGI-V-07507_contig47, whole genome shotgun sequence (1538 bp)
Overview 1 RT 1: 1-1537 bp Neighborhood of RT #1 [1, 1538] RVT-GII Feature: gene Location: 1-487 bp Feature: gene Location: 574-1538 bp Ori: OPE06050.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1288-1537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1288-1537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LLQN01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07507 WH-SGI-V-07507_contig3, whole genome shotgun sequence (433489 bp)
Overview 1 RT 1: 83930-94227 bp Neighborhood of RT #1 [83930, 94238] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 83930-85783 bp Ori: KSK79708.1 Feature: domain Description: PRK05658 Location: 83942-85781 bp Feature: domain Description: PRK05 65 8 Location: 83942-85 781 bp Feature: gene Location: 85890-89627 bp Ori: KSK79709.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 85998-86655 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85 998-8665 5 bp Feature: domain Description: PRK09776 Location: 86868-87339 bp Feature: domain Description: PRK09776 Location: 86868-87339 bp Feature: domain Description: PAS Location: 87384-87921 bp Feature: domain Description: PAS Location: 87384-87921 bp Feature: domain Description: PRK10060 Location: 87930-89577 bp Feature: domain Description: PRK10060 Location: 87930-895 77 bp Feature: gene Location: 90708-92393 bp Ori: KSK79710.1 Feature: domain Description: RVT_N Location: 90765-91005 bp Feature: domain Description: RVT_N Location: 90765 -91005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91053-91689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9105 3-91689 bp Feature: domain Description: GIIM Note: maturase Location: 91743-91974 bp Feature: domain Description: GIIM Note: maturase Location: 91743-91974 bp Feature: domain Description: HNH Note: nucleases Location: 92226-92364 bp Feature: domain Description: HNH Note: nucleases Location: 92226-92364 bp Feature: gene Location: 92722-92858 bp Feature: gene Location: 93117-94238 bp Ori: KSK79711.1 Feature: domain Description: COG3177 Location: 93135-94227 bp Feature: domain Description: COG3177 Location: 93135 -94227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: LLQN01000051.1 Pseudomonas aeruginosa strain WH-SGI-V-07507 WH-SGI-V-07507_contig55, whole genome shotgun sequence (630 bp)
Overview 1 RT 1: 1-601 bp Neighborhood of RT #1 [1, 630] RVT-GII Feature: gene Location: 1-630 bp Ori: OPE05988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-6 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII