myRT

myRT report for GCA_001453345.1_WH-SGI-V-07624

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Seq: LLQV01000056.1 Pseudomonas aeruginosa strain WH-SGI-V-07624 WH-SGI-V-07624_contig6, whole genome shotgun sequence (417160 bp)
Overview 1 RT 1: 55435-63635 bp 2 RT 2: 79900-90197 bp Neighborhood of RT #1 [55435, 63643] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [79900, 90208] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 55435-56451 bp Feature: domain Description: COG3178 Location: 55438-56437 bp Feature: domain Description: COG31 78 Location: 55438-56437 bp Feature: gene Location: 57324-57536 bp Feature: gene Location: 57724-59436 bp Feature: RT Description: RVT_N Location: 57781-58024 bp Feature: RT Description: RVT_N Location: 57781 -58024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58069-58705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58069-58705 bp Feature: domain Description: YkfC Location: 58912-59065 bp Feature: domain Description: YkfC Location: 5891 2-59065 bp Feature: domain Description: HNH Note: nucleases Location: 59242-59380 bp Feature: domain Description: HNH Note: nucleases Location: 59242-59380 bp Feature: gene Location: 59569-62370 bp Feature: domain Description: LptD Location: 59764-62356 bp Feature: domain Description: LptD Location: 59764-62356 bp Feature: gene Location: 62351-63643 bp Feature: domain Description: PRK10770 Location: 62441-63635 bp Feature: domain Description: PRK1 0770 Location: 62441 -63635 bp Feature: gene Location: 79900-81753 bp Feature: domain Description: PRK05658 Location: 79912-81751 bp Feature: domain Description: PRK05658 Location: 7991 2-81 751 bp Feature: gene Location: 81860-85597 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 81968-82625 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 81 968-82625 bp Feature: domain Description: PRK09776 Location: 82838-83309 bp Feature: domain Description: PRK09776 Location: 82838-83309 bp Feature: domain Description: PAS Location: 83369-83891 bp Feature: domain Description: PAS Location: 83369-83891 bp Feature: domain Description: PRK10060 Location: 83900-85547 bp Feature: domain Description: PRK1 0060 Location: 83900-85547 bp Feature: gene Location: 86678-88363 bp Feature: RT Description: RVT_N Location: 86735-86975 bp Feature: RT Description: RVT_N Location: 86735-86975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87023-87659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87023-87659 bp Feature: domain Description: GIIM Note: maturase Location: 87713-87944 bp Feature: domain Description: GIIM Note: maturase Location: 8771 3-87944 bp Feature: domain Description: HNH Note: nucleases Location: 88196-88334 bp Feature: domain Description: HNH Note: nucleases Location: 881 96-88334 bp Feature: gene Location: 88692-88828 bp Feature: gene Location: 89087-90208 bp Feature: domain Description: COG3177 Location: 89105-90197 bp Feature: domain Description: COG31 77 Location: 891 05-901 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )