myRT

myRT report for GCA_001453365.1_WH-SGI-V-07625

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Seq: LLQW01000066.1 Pseudomonas aeruginosa strain WH-SGI-V-07625 WH-SGI-V-07625_contig2, whole genome shotgun sequence (408960 bp)
Overview 1 RT 1: 71780-82077 bp Neighborhood of RT #1 [71780, 82088] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 71780-73633 bp Feature: domain Description: PRK05658 Location: 71792-73631 bp Feature: domain Description: PRK05658 Location: 71 792-73631 bp Feature: gene Location: 73740-77477 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73848-74505 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73848-74505 bp Feature: domain Description: PRK09776 Location: 74718-75189 bp Feature: domain Description: PRK09776 Location: 7471 8-751 89 bp Feature: domain Description: PAS Location: 75249-75771 bp Feature: domain Description: PAS Location: 75249-75771 bp Feature: domain Description: PRK10060 Location: 75780-77427 bp Feature: domain Description: PRK1 0060 Location: 75780-77427 bp Feature: gene Location: 78558-80243 bp Feature: RT Description: RVT_N Location: 78615-78855 bp Feature: RT Description: RVT_N Location: 7861 5-78855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78903-79539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78903-79539 bp Feature: domain Description: GIIM Note: maturase Location: 79593-79824 bp Feature: domain Description: GIIM Note: maturase Location: 79593-79824 bp Feature: domain Description: HNH Note: nucleases Location: 80076-80214 bp Feature: domain Description: HNH Note: nucleases Location: 80076-8021 4 bp Feature: gene Location: 80572-80708 bp Feature: gene Location: 80967-82088 bp Feature: domain Description: COG3177 Location: 80985-82077 bp Feature: domain Description: COG31 77 Location: 80985-82077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )