myRT

myRT report for GCA_001453405.1_WH-SGI-V-07631

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Seq: LLRC01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07631 WH-SGI-V-07631_contig2, whole genome shotgun sequence (678044 bp)
Overview 1 RT 1: 83973-94269 bp Neighborhood of RT #1 [83973, 94280] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 83973-85826 bp Feature: domain Description: PRK05658 Location: 83985-85824 bp Feature: domain Description: PRK05658 Location: 83985-85824 bp Feature: gene Location: 85933-89670 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 86041-86698 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 86041 -86698 bp Feature: domain Description: PRK09776 Location: 86911-87382 bp Feature: domain Description: PRK09776 Location: 8691 1 -87382 bp Feature: domain Description: PAS Location: 87427-87964 bp Feature: domain Description: PAS Location: 87427-87964 bp Feature: domain Description: PRK10060 Location: 87973-89620 bp Feature: domain Description: PRK1 0060 Location: 87973-89620 bp Feature: gene Location: 90751-92436 bp Feature: RT Description: RVT_N Location: 90808-91048 bp Feature: RT Description: RVT_N Location: 90808-91 048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91096-91732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 096-91 732 bp Feature: domain Description: GIIM Note: maturase Location: 91786-92017 bp Feature: domain Description: GIIM Note: maturase Location: 91 786-9201 7 bp Feature: domain Description: HNH Note: nucleases Location: 92269-92407 bp Feature: domain Description: HNH Note: nucleases Location: 92269-92407 bp Feature: gene Location: 92764-92900 bp Feature: gene Location: 93159-94280 bp Feature: domain Description: COG3177 Location: 93177-94269 bp Feature: domain Description: COG31 77 Location: 931 77-94269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )