myRT

myRT report for GCA_001453465.1_WH-SGI-V-07639

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Seq: LLRK01000189.1 Pseudomonas aeruginosa strain WH-SGI-V-07639 WH-SGI-V-07639_contig92, whole genome shotgun sequence (2415 bp)
Overview 1 RT 1: 356-2286 bp Neighborhood of RT #1 [356, 2333] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 356-615 bp Feature: gene Location: 630-2333 bp Feature: RT Description: RVT_N Location: 687-930 bp Feature: RT Description: RVT_N Location: 687-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1 61 1 bp Feature: domain Description: GIIM Note: maturase Location: 1665-1896 bp Feature: domain Description: GIIM Note: maturase Location: 1 665-1 896 bp Feature: domain Description: HNHc Note: nucleases Location: 2130-2286 bp Feature: domain Description: HNHc Note: nucleases Location: 21 30-2286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LLRK01000131.1 Pseudomonas aeruginosa strain WH-SGI-V-07639 WH-SGI-V-07639_contig4, whole genome shotgun sequence (405822 bp)
Overview 1 RT 1: 35314-43502 bp 2 RT 2: 59766-70063 bp Neighborhood of RT #1 [35314, 43510] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [59766, 70074] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 35314-36330 bp Feature: domain Description: COG3178 Location: 35317-36316 bp Feature: domain Description: COG3178 Location: 35317-36316 bp Feature: gene Location: 37203-37415 bp Feature: gene Location: 37603-39315 bp Feature: RT Description: RVT_N Location: 37660-37903 bp Feature: RT Description: RVT_N Location: 37660-37903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37948-38584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37948-38584 bp Feature: domain Description: YkfC Location: 38791-38944 bp Feature: domain Description: YkfC Location: 38791-38944 bp Feature: domain Description: HNH Note: nucleases Location: 39121-39259 bp Feature: domain Description: HNH Note: nucleases Location: 3912 1-392 59 bp Feature: gene Location: 39448-42237 bp Feature: domain Description: LptD Location: 39643-42223 bp Feature: domain Description: LptD Location: 39643-42 2 2 3 bp Feature: gene Location: 42218-43510 bp Feature: domain Description: PRK10770 Location: 42308-43502 bp Feature: domain Description: PRK10770 Location: 42 308-43502 bp Feature: gene Location: 59766-61619 bp Feature: domain Description: PRK05658 Location: 59778-61617 bp Feature: domain Description: PRK05658 Location: 59778-61617 bp Feature: gene Location: 61726-65463 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61834-62491 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 61834-62 491 bp Feature: domain Description: PRK09776 Location: 62704-63175 bp Feature: domain Description: PRK09776 Location: 62 704-63175 bp Feature: domain Description: PAS Location: 63232-63757 bp Feature: domain Description: PAS Location: 632 32 -63757 bp Feature: domain Description: PRK10060 Location: 63766-65413 bp Feature: domain Description: PRK10060 Location: 63766-65413 bp Feature: gene Location: 66544-68229 bp Feature: RT Description: RVT_N Location: 66601-66841 bp Feature: RT Description: RVT_N Location: 66601-66841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66889-67525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66889-6752 5 bp Feature: domain Description: GIIM Note: maturase Location: 67579-67810 bp Feature: domain Description: GIIM Note: maturase Location: 67579-67810 bp Feature: domain Description: HNH Note: nucleases Location: 68062-68200 bp Feature: domain Description: HNH Note: nucleases Location: 68062 -682 00 bp Feature: gene Location: 68557-68694 bp Feature: gene Location: 68953-70074 bp Feature: domain Description: COG3177 Location: 68971-70063 bp Feature: domain Description: COG3177 Location: 68971-70063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )